UFO10315.5prime Sequence
1075 bp (964 high quality bases) assembled on 2011-12-08
> UFO10315.5prime
CAGTCGACATGGGCAACAAAGTTGTGACATTTACGGAACAGGAATTGGAT
GACTACCAGGATTGCACGTTCTTCACGCGCAAGGAGATCCTGCGGGTTCA
CAAGCGATTCCGTGAGCTGCGGCCGGATCTGGTGCCTCGCCAAATGACCG
AAGGTCAGGCCTCCAGTGTTAAGGTGCCCTGCGAATGCATTGAGAAGATG
CCCGAGTTGCGTGAGAATCCCTTTCGCCGGCGAATATGCGAGGCCTTCTC
ACGCGATGGCCAGGGCAATTTATCCTTTGAGGACTTTCTGGACGCCCTCT
CCGTTTTTAGCGAGCAGGCGCCGAGGGACATTAAAGTTTTCTACGCTTTC
AAAATTTATGATTTCGATCAGGACGGCTTCATCGGGCACGCCGACCTCAT
GTCCTGCCTGACAACAATGACCAAGAACGAGCTGAGTCCGGAGGAGCACC
AGCAGATTGCCGACAAGGTAATCGAGGAGGCCGACGTCGATGGCGATGGC
AAGTTATCAATTTTGGAGTTCGAGCACGTTATACTCCGGGCGCCCGACTT
TCTATCCACCTTTCACATCAGAATAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCAGCGCATCAGCACTTGTCGCCTTGCGTATATATTTGGCCATG
GTGAACGGGGCGAGAGTGTCATATGGCCACGTTTAATCAACTGTGAACTC
ACAGGAATGGCTGAACGAAAACTATTCTCATTACCTTTAGAAAGCCAGTT
ACCGTAACGCCAATCTGCAATATGT
UFO10315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cib2-RB | 947 | CG9236-RB | 120..686 | 9..575 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20882187..20882402 | 360..575 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 20880760..20880904 | 94..238 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 20881028..20881150 | 238..360 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 20880049..20880100 | 9..60 | 260 | 100 | Plus |
| 2R | 25286936 | 2R | 20880176..20880213 | 58..95 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:30:52 has no hits.
UFO10315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:23 Download gff for
UFO10315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9236-RB | 111..690 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:27 Download gff for
UFO10315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cib2-RB | 111..690 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:44 Download gff for
UFO10315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cib2-RB | 111..690 | 1..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:44 Download gff for
UFO10315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20880040..20880099 | 1..59 | 93 | -> | Plus |
| 2R | 20880178..20880212 | 60..94 | 100 | -> | Plus |
| 2R | 20880761..20880903 | 95..237 | 100 | -> | Plus |
| 2R | 20881028..20881150 | 238..360 | 100 | -> | Plus |
| 2R | 20882188..20882406 | 361..579 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:27 Download gff for
UFO10315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16767545..16767604 | 1..59 | 93 | -> | Plus |
| arm_2R | 16767683..16767717 | 60..94 | 100 | -> | Plus |
| arm_2R | 16768266..16768408 | 95..237 | 100 | -> | Plus |
| arm_2R | 16768533..16768655 | 238..360 | 100 | -> | Plus |
| arm_2R | 16769693..16769911 | 361..579 | 99 | == | Plus |
