UFO10316.5prime Sequence
1051 bp (970 high quality bases) assembled on 2011-12-08
> UFO10316.5prime
CAGTCGACATGGCCAAATGCGAATGTCTTCTCGCTGCGGGCCTGGTTCCA
TTGATGCTGACCAGCTCCATCGTGGCCACTTGGACTTGGAGATGTTTGTA
CAAAGAATTTCCAGTGGACGTTGAAAAGATCAAGGGCGGCTGGTATGTTT
ATGGGACTAGTCCCGGGAGAATTAAGGTCTGCTACTTTGAAGAGCTGGAT
CTGTATTGGACCAGGATCACCCAAACGGACTTTACAAATTATGCCGTTGA
GCTGCATTGTTCCTTACCCTGGATGCGTCATCAGATGGCTATTTATACGC
GAAAAGCCATCCCGAGTGAAAAGACTCTCGAAGATATAGCTGCGTATCTG
AAGACAGTGGATCTGACAATCAAAAACTTCAGCCTAATCCGGCAAAATAA
GGACTGTCGGTCGCAGAAGCCTCCGATCATGCAGCGCTGGCATTTGTCCC
GATATCTGTACATGGATTATAATCCGGTTTATGTCAAGCCCTTGGTGGAG
AACGAAAACATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAAGCCATCACAACGGCATGATGAACCTGAATCGCCAGCG
GCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGG
GGCGAAGAAGTTGTCCATATGGCCACGTTTAATCAAACTGTGAAACCCAC
CCAGGGATTGGCTGAACGAAACATATCTCATAAGCCCTTAGGAGTAGCAG
CTTCACGGTAACACGCCAATCTGCCAATATATGGTGTAGAACTGCGAATT
C
UFO10316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34256-RB | 762 | CG34256-RB | 93..597 | 8..512 | 2525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18988901..18989217 | 512..196 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 18989603..18989723 | 128..8 | 605 | 100 | Minus |
| 3L | 28110227 | 3L | 18989467..18989535 | 195..127 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:31:01 has no hits.
UFO10316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:24 Download gff for
UFO10316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34256-RB | 84..602 | 1..518 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:32 Download gff for
UFO10316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34256-RB | 84..602 | 1..518 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:47 Download gff for
UFO10316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34256-RB | 84..602 | 1..518 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:47 Download gff for
UFO10316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18988901..18989217 | 196..512 | 100 | <- | Minus |
| 3L | 18989467..18989533 | 129..195 | 100 | <- | Minus |
| 3L | 18989603..18989728 | 1..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:32 Download gff for
UFO10316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18982001..18982317 | 196..512 | 100 | <- | Minus |
| arm_3L | 18982567..18982633 | 129..195 | 100 | <- | Minus |
| arm_3L | 18982703..18982828 | 1..128 | 96 | | Minus |
