UFO10318.5prime Sequence
1099 bp (1003 high quality bases) assembled on 2011-12-08
> UFO10318.5prime
CAGTCGACATGAACTGTCTGAAGATCTGCGGCTTTTTCTTCGCTCTGATT
GCGGCTTTGGCGACGGCGGAGGCTGGCACCCAAGTCATTCATGCTGGCGG
ACACACGTTGATTCAAACTGATCGCTCGCAGTATATACGCAAAAACGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATC
AACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACT
CATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCA
TCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTC
GCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGT
CCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTG
GCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAG
GTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCC
GGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGC
TCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTC
ACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGGC
AAGAATGTGAATAAGGGCCGGATAAAACTTGTGCTTATTTTTTCTTTACG
GTTCTTTAAAAGGCCGTAATATCCAGCTGACCGTCTGGTTATAGGTACAT
TGAGCACTGACTGAAATGCTCAAATGTTCTTTACGATGCCATTGGGATTA
TATCACGTGGTTTTTCCAGTGATTTTTTCCCCATTTAGCCTCTTAGCTCT
GAAGATCATACTCGTAGCTACTACGAGTTAGATCCAATTATGATCTTAA
UFO10318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IM14-RA | 223 | CG33990-RA | 32..171 | 7..146 | 700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20870555..20870626 | 75..146 | 360 | 100 | Plus |
| 2R | 25286936 | 2R | 20870423..20870492 | 7..76 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 715..782 | 123 | 68.1 | Plus |
UFO10318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:25 Download gff for
UFO10318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IM14-RA | 1..141 | 9..150 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:41 Download gff for
UFO10318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IM14-RA | 26..174 | 1..150 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:54 Download gff for
UFO10318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IM14-RA | 26..174 | 1..150 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:54 Download gff for
UFO10318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20870417..20870491 | 1..75 | 96 | -> | Plus |
| 2R | 20870556..20870626 | 76..146 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:41 Download gff for
UFO10318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16757922..16757996 | 1..75 | 96 | -> | Plus |
| arm_2R | 16758061..16758131 | 76..146 | 100 | == | Plus |
