UFO10319.5prime Sequence
1099 bp (988 high quality bases) assembled on 2011-12-08
> UFO10319.5prime
CAGTCGACATGCCTTGCAAGGGATGTGGAAACAACTGCCAGTGCTCAGCC
GGAAAGTGCGGAGGTAACTGCGCCGGAAACAGCCAATGCCAATGCGCCGC
CAAGACGGGAGCCAAGTGCTGCCAGGCCAAGGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATA
TTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGT
TTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAAC
ATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACA
CGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGT
ATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTG
TAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGC
CATACGAAATTCCCGGATGAGCATTCATCACGCGGGCAAGAATGTGAATA
AAGGCCGGATAAACCTTGTGCTTATTTTTCTTTACGGTCTTAAAAGGGCC
GTAATATCCAGCTGAACCGGTCTGGTTATAGGTACATTGAGCAACTGACT
GAAATGCCTCAAAATGTTCTTTACGATGCCATTGGGATATTATCAACGTG
TTATCCAGTGATTTTTTCTCCATTTTAAGCTCTAGCCTCCTGAAAGATCC
ATACTTCGTTTAGCATACCTTATCGAAGGTTAAGATCAATTATGACTTA
UFO10319.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MtnE-RA | 344 | CG42872-RA | 71..193 | 9..131 | 615 | 100 | Plus |
| MtnE-RB | 604 | CG42872-RB | 71..193 | 9..131 | 615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20534432..20534529 | 131..34 | 490 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 700..767 | 123 | 68.1 | Plus |
UFO10319.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:26 Download gff for
UFO10319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42872-RA | 64..193 | 1..131 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:45 Download gff for
UFO10319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MtnE-RA | 64..193 | 1..131 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:57 Download gff for
UFO10319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MtnE-RB | 64..193 | 1..131 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 01:08:57 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 16:24:45 has no hits.
