UFO10320.5prime Sequence
1093 bp (992 high quality bases) assembled on 2011-12-08
> UFO10320.5prime
CAGTCGACATGAAGACTCCGCTATTTCTCCTCTTGGTCGTATTGGCTTCC
CTCCTGGGATTGGCCTTATCCCAGGATCGAAATGATACGGAGTGGATCCA
AAGTCAGAAGGATCGTGAGAAGTGGTGCCGGCTAAACTTAGGACCCTACC
TCGGTGGCAGATGCCGAAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAAT
AAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTT
GCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAG
AGCGATGAAAACGTTTCAGTTTGCTCATGGGAAAACGGTGTAACAAGGGT
GAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAAT
TCCGGATGAGCATTCATCAGCGGGCAGAATGTGAATAAAGGCCGGATAAA
ACTTGTGCTTATTTTTTCTTACGGTCTTTAAAAGGCGTATATCCAGCTGA
CGTCTGGTAATAGTACATTGAGCACTGACTGAAATGCCTCAAATGTTCTT
ACGATGCAATGGGATTATCCACGTGTATATCAGTGATTTTTTCTCAATTT
AGCTTCTAGCTCTGAAGATCCTAACTTCGATAGCAACCTACCG
UFO10320.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dup99B-RA | 257 | CG33495-RA | 28..190 | 8..170 | 815 | 100 | Plus |
| Dup99B-RB | 310 | CG33495-RB | 28..143 | 8..123 | 565 | 99.1 | Plus |
| Dup99B-RB | 310 | CG33495-RB | 188..243 | 115..170 | 280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29715235..29715350 | 123..8 | 565 | 99.1 | Minus |
| 3R | 32079331 | 3R | 29715135..29715190 | 170..115 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:31:33 has no hits.
UFO10320.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:26 Download gff for
UFO10320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dup99B-RA | 20..195 | 1..176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:50 Download gff for
UFO10320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dup99B-RA | 20..195 | 1..176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:02 Download gff for
UFO10320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dup99B-RA | 20..195 | 1..176 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:02 Download gff for
UFO10320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29715135..29715190 | 115..170 | 100 | <- | Minus |
| 3R | 29715244..29715358 | 1..114 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:50 Download gff for
UFO10320.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25540857..25540912 | 115..170 | 100 | <- | Minus |
| arm_3R | 25540966..25541080 | 1..114 | 97 | | Minus |
