UFO10327.5prime Sequence
1114 bp (994 high quality bases) assembled on 2011-12-08
> UFO10327.5prime
CAGTCGACATGTTCATCCAAAGCTTCCTGTTGCTATTGGCGCTCAATTCC
CTGTCCGCAGGACCAGTAATCCGGCCGGAAGAACGCATTATCGGTGGACA
ACCCATTGGAATCGAGGAGGCACCATGGCAGGTGTCCATACAACGTGATG
GCAAACATTTATGCGGTGGCTCCATTTACAGCGCAGATATCATCATTACT
GCGGCCCATTGCGTCCAGGGCCAGGGATATCAAGTTCGGGCAGGATCCGC
CTTGAAGAACTCCAATGGAAGTGTTGTCGATGTGGCCGCTATAAGGACGC
ATGAGGGATTAGGAAACGACATCGCCATCGTGCGGCTAAGTAAGCCACTT
GAGTTCACAAACCAAGTTCAGCCCATTCCATTGGCCAAGACAAATCCCCC
GCCTGGATCGATTGCCTTCGTCTCTGGCTGGGGAAGTTCTTCTTATTACT
CACATCCCATCGATCTTCAAGGAGTAAACCTTTACATTCAATGGCCGTAC
TATTGTGGATTAACTGAACCGTCAAGAATATGCGCCGGATCTTTTGGAAG
GGCGGCTTGTAAAGGAGACTCTGGTGGACCGTTGGTGTTTGACCAACAAC
TTGTGGGTGTTGTATCCGGGGGTACAAAGGATTGCACGTATAGTTCAATC
TACACTAGTGTCCCATATTTCCGTGAATGGATCTTAAATGCTATCGATGA
AATAATGTCAGCGAATCGAAACAAAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGGATCTATCACAGGAGTCCAGCGAGCTC
GATATTCAAATTACCGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
ATCATTAAGCATTCCTGCGAACATGAAGCAATCACAAAACGGCATTGATG
ATCTGAATCCGCCAGCGGACATTCAGTCACTGTCGCTTGGCAATATATTT
GCCATGGTGAACCG
UFO10327.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Send2-RA | 774 | CG18125-RA | 35..751 | 9..725 | 3585 | 100 | Plus |
| CG17234-RA | 808 | CG17234-RA | 29..774 | 3..694 | 630 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14345938..14346654 | 725..9 | 3585 | 100 | Minus |
| 2L | 23513712 | 2L | 2253073..2253281 | 3..211 | 460 | 81.3 | Plus |
| 2L | 23513712 | 2L | 2253423..2253543 | 314..434 | 365 | 86.8 | Plus |
| 2L | 23513712 | 2L | 2253653..2253818 | 529..694 | 305 | 78.9 | Plus |
| 2L | 23513712 | 2L | 2253315..2253388 | 221..294 | 205 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:31:58 has no hits.
UFO10327.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:29 Download gff for
UFO10327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18125-RA | 1..720 | 9..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:05 Download gff for
UFO10327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Send2-RA | 26..760 | 1..734 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:14 Download gff for
UFO10327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Send2-RA | 26..760 | 1..734 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:14 Download gff for
UFO10327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14345923..14346660 | 1..737 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:05 Download gff for
UFO10327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14345923..14346660 | 1..737 | 98 | | Minus |
