UFO10331.5prime Sequence
1084 bp (977 high quality bases) assembled on 2011-12-08
> UFO10331.5prime
CAGTCGACATGAAGTTCATCGCAGCTGGATTAGCTCTTCTGGTCTGCTCC
ATCCAGTTGGGTGAAGGAGCACCTGGTCACCTGCTAGACTCCAGTTGTGG
CACGACAAAACCAGAATTTATCCCAATGATCACCGGGGGCGCAGACGCAG
GCCTATTCTCAAATCCATGGATGGTGAAGGTGCTAGGCGAGAAACTATGT
GGTGGCTCGCTAATCACCAGTCGCTTCGTTCTCACGGCCGCCCATTGCAT
CGTTAGTACACACATGAGAGTACGCTTGGGCGAGTATAAAACCCGCTTTC
CTGGCAAGGATTGCTCGCGCTGCGTGCCCAAGTCATATAAACTCAGGAGA
ATACGCTTGGGCGAGTATGACACCCGCTTTCCTGGCAAGGATTGCTGCGT
GCCCAAGTCATATGAACTCGCTGTGGATAGAAAGATTTTGCATGCGGATT
ATAACCTAAACTTGGACAACGACATCGGCCTGTTGCGCATGAAGAGCTTC
GTCCAGTACTCAGACTACGTCCGGCCGATCTGTCTCCTGGTCGAGGGACA
CATGGCGGAAAGTCCCATCTTCAACATCACCGGCTGGGGTGTCACCAACG
ATGGCACGCCCAGCCGGAGGCTCCAGAGGGCCACTGTGTACAACACCGAC
CTCCACTTCTGCCGAAGCAAGTTCACCAAGCAGGTGGATGAGTCGCAGAT
TTGTGCTGCTGGCACAAATAGCGATGCATGCCACGGCGACTCGGGAGGCC
CGCTGAGCGCACAGGTTCCTTTTGCCGGCAGCTGGCTGACCTTCCAGTAC
GGACTGGTCAGCTACGGGTCGGCGGCATGCCATTCCTTCTCCGTTTACAC
CAACGTTACGCACCACAGGGACTGGATTGTGAACGCCATCGAGGACTTCA
GCAGAGCTTTCCAGCTTAGACTCGCAAGCTTTCTAGACATTCGTTTGGCG
CCGCGGGCCCAGGTAAGTGGTCATATCATATCATAATCATAATCATAATC
ACACTAGCTAGAGATCTGTCATGACTAGGTGCTGGAATTCTCCACATTAA
AACGCCCGGCGCAACGAACGTCTGACAATCGAAT
UFO10331.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30414-RC | 975 | CG30414-RC | 24..938 | 9..923 | 4560 | 99.9 | Plus |
| CG30414-RB | 1094 | CG30414-RB | 143..1057 | 9..923 | 4560 | 99.9 | Plus |
| CG30414-RC | 975 | CG30414-RC | 281..359 | 347..419 | 235 | 87.3 | Plus |
| CG30414-RC | 975 | CG30414-RC | 362..434 | 266..344 | 235 | 87.3 | Plus |
| CG30414-RB | 1094 | CG30414-RB | 400..478 | 347..419 | 235 | 87.3 | Plus |
| CG30414-RB | 1094 | CG30414-RB | 481..553 | 266..344 | 235 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23384237..23384650 | 923..510 | 2055 | 99.8 | Minus |
| 2R | 25286936 | 2R | 23384702..23384954 | 513..261 | 1250 | 99.6 | Minus |
| 2R | 25286936 | 2R | 23385112..23385326 | 223..9 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 23384871..23384952 | 419..344 | 225 | 87.8 | Minus |
| 2R | 25286936 | 2R | 23385004..23385047 | 266..223 | 220 | 100 | Minus |
| 2R | 25286936 | 2R | 23384796..23384868 | 344..266 | 210 | 87.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:19 has no hits.
UFO10331.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:31 Download gff for
UFO10331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30414-RB | 130..1052 | 9..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:18 Download gff for
UFO10331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30414-RB | 143..1065 | 9..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:25 Download gff for
UFO10331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30414-RB | 143..1065 | 9..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:25 Download gff for
UFO10331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23384237..23384646 | 514..923 | 99 | <- | Minus |
| 2R | 23384702..23384949 | 266..513 | 100 | <- | Minus |
| 2R | 23385005..23385047 | 223..265 | 100 | <- | Minus |
| 2R | 23385113..23385326 | 9..222 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:18 Download gff for
UFO10331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19271760..19272169 | 514..923 | 99 | <- | Minus |
| arm_2R | 19272225..19272472 | 266..513 | 100 | <- | Minus |
| arm_2R | 19272528..19272570 | 223..265 | 100 | <- | Minus |
| arm_2R | 19272636..19272849 | 9..222 | 100 | | Minus |
