UFO10332.5prime Sequence
1103 bp (982 high quality bases) assembled on 2011-12-08
> UFO10332.5prime
CAGTCGACATGACAATGTCGATGTATTCGACGACGGATAAAATGAAAATG
TCAGCGCCCAGTTGTTTTCCAGGACGCTACAGTCCCTCCTATCGAAGTTC
GGAGCAAATGCGTCGCTGCATGCCAAATCCATCTGGTGATATCTTCGCGG
GCATCAACGATGGAATCCTCAGCAGAGCGGAGGCCCTGGCCGCCGTCGAC
ATCCAGAAGCACCAAGCCCAGCATGTACATAGCCAAATGCCCTCCCAAAT
TAAGCACGACGTCATGTACCATCATCACTCCATGAGTGGGCCTCCCCAGC
GTCCGTTGCAGGAAAATCCTTTTTCTCGACAGATGCACCACTCGATGGAC
CAACTGGACATGCTGGATCCGACGGGCTCGATGACCACACTGGCGCCCAT
CTCGGAGTCGCCGCTAACGCCCACACACCAACACCTGCACGGTTCCTATC
ACAGCATGAATCACATGATGAGCCACCACCATCCGGGCACGTTAAGTGGC
CATACGGGGGGACATCATGGACACTCGGCGGTACATCATCCTGTTATCAC
GGCGGCAGTGGCTGCCGCTGGCCTGCATCCCGACACAGATACCGATCCTC
GCGAGCTGGAGGCGTTTGCGGAGCGATTCAAGCAGCGGCGCATCAAGCTG
GGTGTCACGCAGGCGGACGTGGGCAAAGCCCTGGCCAATCTCAAGTTACC
TGGCGTCGGAGCGCTGTCGCAGAGCACGATCTGTCGATTCGAGAGCCTGA
CCCTGTCCCACAACAACATGATCGCCCTTAAGCCCATCCTGCAGGCGTGG
CTCGAGGAGGCCGAGGCGCAGGCGAAAAACAAGCGGCGCGATCCGGATGC
GCCCAGTGTCCTGCCGGCGGGCGAAAAGAAAGGACTTCCATTGCGGCACC
TGAAAGCGTTCTCTGGAGCCTACTTCGCGTCAGCGAGGCCATCCGGTGAG
AAATCGCAGCGATTGCGAAAGCTGATTGAAGAAACGTGGTGCGCGTCTGG
TCTGCATCACGTCAAAACAAAAACGTATAGTAGTATGTAACACCATCATG
ACTGCAGGTCGCGCAGAATGGCATCGCAGGCTTTCAGAACATGTGGCCCG
GCA
UFO10332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| acj6-RF | 2594 | CG9151-RF | 750..1816 | 8..1054 | 4845 | 98.1 | Plus |
| acj6-RI | 4343 | CG9151-RI | 750..1822 | 8..1054 | 4785 | 97.6 | Plus |
| acj6-RH | 2573 | CG9151-RH | 750..1795 | 8..1054 | 4520 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15354229..15354459 | 881..651 | 1155 | 100 | Minus |
| X | 23542271 | X | 15354754..15354955 | 511..310 | 1010 | 100 | Minus |
| X | 23542271 | X | 15371511..15371688 | 312..135 | 890 | 100 | Minus |
| X | 23542271 | X | 15354534..15354677 | 653..510 | 720 | 100 | Minus |
| X | 23542271 | X | 15378188..15378315 | 135..8 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:27 has no hits.
UFO10332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:31 Download gff for
UFO10332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| acj6-RF | 134..1206 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:23 Download gff for
UFO10332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| acj6-RF | 134..1206 | 1..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:29 Download gff for
UFO10332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| acj6-RF | 744..1816 | 1..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:29 Download gff for
UFO10332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15354755..15354953 | 312..510 | 100 | <- | Minus |
| X | 15371512..15371688 | 135..311 | 100 | <- | Minus |
| X | 15378189..15378318 | 1..134 | 97 | | Minus |
| X | 15354227..15354458 | 652..882 | 99 | <- | Minus |
| X | 15354536..15354676 | 511..651 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:23 Download gff for
UFO10332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15248569..15248709 | 511..651 | 100 | <- | Minus |
| arm_X | 15248788..15248986 | 312..510 | 100 | <- | Minus |
| arm_X | 15248260..15248491 | 652..882 | 99 | <- | Minus |
| arm_X | 15265545..15265721 | 135..311 | 100 | <- | Minus |
| arm_X | 15272222..15272351 | 1..134 | 97 | | Minus |
