UFO10333.5prime Sequence
1092 bp (978 high quality bases) assembled on 2011-12-08
> UFO10333.5prime
CAGTCGACATGATGCAACAGTTTATCGGCCTAATTTTGGCGGTCGTGATT
CTGCGAGAGATTCGGGCACGTGAGGCGATCGCAACCATTCCAGATGTGGG
TCAGATAATCAAAGATCTCGATGGACTGCACATCGATGGAGAAATGTTTC
ATCAAGGTTCTCCCTGCAGAGTGGATGTGCAAAATGATCTGCCCCGTTTG
GATAAAGTGCAGCCGCTGTACCTGCGCCCAGGAACAGATCTCTACTGGCT
GCCCAATGCTTATGGGCACCTGGAGGTTCAACGCGGCGCCAGCATCGAGC
TGCACTGCAGCCATTCGTTCGCGCCCGCGAATGGAGAGTCTTTGGATGCG
AAGCTGCGTTCCATTCGGGTGAAGTGCGTGCAGGACACCACCTTCGAGTG
GATGGGGGCTAAAATCCATTTCAGCGACTTTGTCTGCAATCACTCCATGC
CCTACACCGTGGAGCGATTGGACAGGAGTTGTGGCAGCGACACTCCGAGT
CCATCCACCTCGTACTTGTATCGCGTGGGCTATGACACCGGAGATGGCAG
ATTTGTGGCCACCATGGAGCTGTGCCACGACCCAAATCAACTGCGCACCC
ACTACGCCCACCATCAACTGACACCGGCGAATGTGCACTTCCAGAAAAAA
TTGAAACGCCCGAGGTTTAGCACCGCCGGCCATTTCACGGGCTTTGACAT
GGCCAGAATTTATTCGCCCAAGAGCCAGGAGAAACTGATGGTGCCCGGCC
TCATTGACGTGAAGAGTGGTCTGTTCCTGGCCCGCGGACATTTGACGGCC
AAAGCGGATCTAATCTATGCTAGCCAACAGAAGAGCAGCTTCAACTACAT
GAACGTGGCGCCGCAATGGCAGAGCTTCATGGTAGTCAGTGTTCCAAGCT
GGAAGAATCCACCCGACAATATGGTGGCCCGTTCGGGCATCACGGCCACT
GTGGTATACGGGCATCTTATGGCGAAATGAAAGGTGGCCTGGCAGCAAAG
TCCTCCACAATGACACCATGCCAATAACATAGGTGTGGGTGGCCGGTGCC
CAGCTCTTTCTATACGCGTTCTTCATCGAACAAAGGTCATCG
UFO10333.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14118-RA | 1637 | CG14118-RA | 56..1119 | 9..1079 | 4910 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12893323..12894222 | 155..1058 | 3980 | 98 | Plus |
| 3L | 28110227 | 3L | 12892713..12892862 | 9..158 | 720 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:32:34 has no hits.
UFO10333.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:32 Download gff for
UFO10333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14118-RA | 56..1119 | 9..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:29 Download gff for
UFO10333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14118-RA | 56..1119 | 9..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:33 Download gff for
UFO10333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14118-RA | 56..1119 | 9..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:33 Download gff for
UFO10333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12892713..12892860 | 9..156 | 98 | -> | Plus |
| 3L | 12893325..12894240 | 157..1079 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:29 Download gff for
UFO10333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12885813..12885960 | 9..156 | 98 | -> | Plus |
| arm_3L | 12886425..12887340 | 157..1079 | 97 | | Plus |
