UFO10335.5prime Sequence
1107 bp (993 high quality bases) assembled on 2011-12-08
> UFO10335.5prime
CAGTCGACATGCGTTCCTTCATTCTGATTGCCCTCTTCGCCCTGATTGCC
CTGGCTGCTGCTCAAGGCGGACCACAAGGTGGACAGCAGGGTGGGCAAGG
AGGATCTCAAAATGGTCAGCAAGGAGGCCAGCAGGGAGGCTCCCAGGAAG
GATCCCAGGAAGGATCCCAGGAAGGACAACAGGGAGGTCAGCAGGGAGGT
CAGCAGCAGGGTGGTCCTGGCGGTCCATGGGGTCTGCCTCCGAATGGAAC
TGAACTCTCCAACAGTACCACAACTTCGACCACTGAGGCTACCAGCACTG
AATCCAGCAGCACAGAGGTTTCCTCTTCGGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTT
AAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACAT
ATTCTCAATAAACTCTTTAGGGAATAGGCCAGGTTTTCACCGTAACACGC
CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTC
ACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAACGGTGTAACA
GGGTGAACACTATCCAATATCACAGCTCACCGTCTTTCATTGCAATACGA
AATTCGGAATGAACATCATGTGGCGGGCAGAATGGTGAATTAGGCGATAA
AACTTGTGCCTTATTTTTTCTTTACGGTCTTAAAAAGCCGTAATTCCAGC
CTGAACG
UFO10335.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12506-RA | 471 | CG12506-RA | 49..369 | 9..329 | 1605 | 100 | Plus |
| CG13946-RA | 406 | CG13946-RA | 7..299 | 9..325 | 1010 | 89 | Plus |
| CG13947-RA | 483 | CG13947-RA | 32..117 | 9..94 | 235 | 84.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 773595..773915 | 9..329 | 1605 | 100 | Plus |
| 2L | 23513712 | 2L | 776542..776834 | 9..325 | 945 | 88 | Plus |
| 2L | 23513712 | 2L | 779204..779289 | 9..94 | 235 | 84.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:32:06 has no hits.
UFO10335.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:29 Download gff for
UFO10335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12506-RA | 14..352 | 2..343 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:10 Download gff for
UFO10335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12506-RA | 42..380 | 2..343 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:17 Download gff for
UFO10335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12506-RA | 42..380 | 2..343 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:17 Download gff for
UFO10335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 773588..773915 | 2..329 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:10 Download gff for
UFO10335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 773588..773915 | 2..329 | 98 | == | Plus |
