UFO10336.5prime Sequence
1114 bp (963 high quality bases) assembled on 2011-12-08
> UFO10336.5prime
CAGTCGACATGGAACGCTGGCATGATCGCGTGGCTGTGGTCACGGGTGCC
AGCTCCGGGATAGGAGCTGCAGTGGCACGCCACTTGGTGAGTGCAGGGGT
CATTGTTGTAGGTCTGGCCCGTCGGGTCGACCGCATGAAGGCTATCAAGG
AACAACTGCCGCCGGAGCTGCAGGGCCGCCTACATGCCATCCACTGCGAT
GTCGAAGATCTGGACTCGGTGACGGCTGCCTTTGACTGGATCGAGGAGCA
GCTCGGCGGATGTGACATCCTGGTGAACAACGCGGGATGCCTGAACCCCG
GACAACTTCTCACCCTGGAGCTAGAGCAGCTGCAGCAGGTCCTGAACGTG
AACTTGATGGGCGTGGTCATCTGCACCCGCCGCGCCTTTCGCTCAATGCA
GCAACGCGAGGTGGATGGCCATGTGATCCTCATTAACAGCCTAACGGGCC
GTAACATCATCAATCCACCTGGTGACGAGCTGCAGGTGCTCAACATGTAT
CCGCTTACCAAGCACGGGGTTACGGCCATGTTGGAAGTCCTGCGACAGGA
GCTGCGCGGATTCAAGACTAAGATAAAGGTCACAAGCATCACTCCAGGTG
TGACCGATACGGAGATTCTGCCCTCCGGCTACGGTATTTTGCCGATGCTA
AAACCGGATGACATTGCCGCAGCATCATGTACGTGCTCGGCACACCCGCA
CATGTCCAGGTGCACGAGCTGACCATTAAGCCGTTAGGAGAGCCTTTCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGTTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGGAACAAATCCAGATGGAGTTCTGAAGGTCATTACTGGATTT
TATCACAGGAGTCCAAGGGGAGCTCGATTATCAATTACGCCCGGCCCTGC
AACTCATCGCAGTACTGTTGTTAATCATAGGCATTCTGCCCGAACATGGA
AGCCATCAAAACGGCTGGATGACCTGGAATCGCAGGCGGGCATCAGACCT
TGTGTCGCCCTTGG
UFO10336.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40486-RC | 960 | CG40486-RC | 127..867 | 9..748 | 3665 | 99.7 | Plus |
| CG40486-RB | 940 | CG40486-RB | 127..867 | 9..748 | 3665 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22959390..22959965 | 584..9 | 2865 | 99.8 | Minus |
| X | 23542271 | X | 22958949..22959113 | 748..585 | 775 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:12 has no hits.
UFO10336.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:30 Download gff for
UFO10336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40486-RB | 112..856 | 9..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:13 Download gff for
UFO10336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40486-RB | 112..856 | 9..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:22 Download gff for
UFO10336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40486-RB | 127..871 | 9..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:22 Download gff for
UFO10336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22958945..22959113 | 585..753 | 98 | <- | Minus |
| X | 22959390..22959965 | 9..584 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:13 Download gff for
UFO10336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22360781..22360949 | 585..753 | 98 | <- | Minus |
| arm_X | 22361226..22361801 | 9..584 | 99 | | Minus |
