UFO10339.5prime Sequence
1099 bp (998 high quality bases) assembled on 2011-12-08
> UFO10339.5prime
CAGTCGACATGTTCCGAATCGCTCGTGTTATTTGGCTGCTGCAGTTGCTG
CTGCTGTTGGATCTCAAATTTTCCAACGCCGAGCCGCACAACAAACAACT
GACTGTATTCGCGGAAGCTGGTCGACAGGAGTGCTTTTATCAGCCGATTG
CCACCACCGAGAACATTAAAATCGACTATCAGGTGATACATGGAGGTCTC
GGCGAGACACACATCAATTTTAATCTTATGGATCCAAGTCGTCGACTTCT
GATAGCAGAAACCAAAAGGCAAATGGGGAAACACAGCATTCAGGCTAACG
AAACTGGTTCTTATAAGTTTTGCTTCGATAATACCATCAGCACTTTTAAC
CAAAAGATAGTTTCGTTTACTCTTGAAGTAGCTCCGGCCGATCGAGAAGA
GCGGGAATTGCGTGATCTTCGCCAGGAAATGTTAACCGACTACCACTTTG
ACGTGGCCTATACTGGTATCGATAGTTACGTGGGCAAGATCCATGTGAAC
CTCATGAGATCGCGTCAAACTCAGGACTTCATTCGAGCGATCGAGGCCAG
GGATCGCAACGTGGCCGAATCCACCTACTCCATGGTCAACAAATGGTCGT
GGGCCCAATTTTTGTCCATGATATTTGTTGGCTTTCTACAGGTCTTGATG
GTCAGGAGTATTTTTAATACGACTGGAACGTTTTACAAGTTTTGGAAAAG
TTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCACAGGAGTCCAGGCGGAGCTCGATATCAATTACGCCCGCCCT
GCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCGGACATGGA
AGCATCACAACGGCATGATGACCCTGATCGGCAGCGGAATCAGCACCTGT
CCGCCTGGCGTATTAAATTTGGCCCATGGGTGAAACGGGGGGCAGAATG
UFO10339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31787-RA | 876 | CG31787-RA | 87..782 | 9..704 | 3465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18284939..18285634 | 704..9 | 3465 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-27 00:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6833 | 59..21 | 134 | 85 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6530..6582 | 62..14 | 119 | 77.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2829 | 72..21 | 118 | 71.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1563..1596 | 59..26 | 116 | 82.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2335 | 69..31 | 114 | 76.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2687 | 58..1 | 113 | 70.7 | Minus |
UFO10339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:35 Download gff for
UFO10339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31787-RA | 42..758 | 1..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:47 Download gff for
UFO10339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31787-RA | 42..758 | 1..720 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:46 Download gff for
UFO10339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31787-RA | 78..794 | 1..720 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:46 Download gff for
UFO10339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18284926..18285643 | 1..720 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:47 Download gff for
UFO10339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18284926..18285643 | 1..720 | 98 | | Minus |
