UFO10341.5prime Sequence
1104 bp (955 high quality bases) assembled on 2011-12-08
> UFO10341.5prime
CAGTCGACATGGCTCTGGAAGCGATTTGCGGCATGAATAAAATGCCTTTT
ATGCGGCGCTTCGATGACTTGCAGTCCGAATGGCAGAAGGAGCAGCTTCG
CGAGGCAACCAGTAATTTTGAGAATCCCTACGAACTGATGGCGCCTCCCT
TCGAAAGGCCCGCTGAGAATCTGCCCAAGATCCTGTCGCACTGTGGCATT
CGCATGGATTTCGATCACGGCACCACCACTCTGGGTTTCAAGTATCGCGG
AGGAGTGATTCTGTGTGCTGATTCTAGGGCCACCTCTGGCCAGTATATTG
GATCACAGACGATGAGGAAAATAGTCGAGCTGAACGACTATATGCTGGGC
ACCTTGGCCGGCGGAGCCGCGGATTGCGTCTACTGGGATCGGGTTTTGGC
TAAGGAGTGTCGCCTGCACCAGCTGCGCTATCGGAAACGCATGACCGTGG
ACACGGCTGCCCGGATCATCTGCAACATATCCACGGAGTACAAGGGCATG
GGTCTGGTGATGGGCATGATGCTGGCCGGCTTCGACGACGAGGGACCCAA
GCTGATTTACGTGGACTCGGAGGGCATGAGATCCCATGGTCAAGTCTTCT
CCGTGGGCAGCGGTTCTCCATATGCGCTCGGCGTATTGGACACTGGGTAC
CGCTATGATCTCTCCGATCAGGAGGCCTATGACCTGCCAGGCGAGCGATT
TACCATGCGACCAGTAAGGATGCCTATTCTGGTGGAATCGTGCGTCTCTA
CCACATTCATTCGGAGGGCTGGCGAAATATCTGCAATACGGACTGCTCCG
ATCTCCATGACTCGTATTGCGCATCTGGGTGTCCGGGGAACGAGAAAGAT
GTAGAAACGTAGCGATCCCGACATGATAGCCCTGTTCCAGTGCTGGACGA
AGAAGAATATCACAGCAGAACAATTTGCAGACTAAGCTGGCAACGTAGCA
AGCTTTCTAAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTTGTTCATA
ATCATAATCATATCATATCATATTCACACTAGCTAAGAGGATTCTGTCAT
GACTAAGTGCTTGAATTCTCACATAAAAACGCCCGGCGGCAACGGACGTT
TCGA
UFO10341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta5R1-RA | 1107 | CG9868-RA | 89..1030 | 9..945 | 4450 | 98.6 | Plus |
| Prosbeta5-RA | 1139 | CG12323-RA | 386..622 | 293..529 | 240 | 73.9 | Plus |
| Prosbeta5-RB | 1076 | CG12323-RB | 323..559 | 293..529 | 240 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23308731..23309523 | 945..158 | 3545 | 98.5 | Minus |
| 2R | 25286936 | 2R | 23309580..23309728 | 157..9 | 745 | 100 | Minus |
| 2R | 25286936 | 2R | 10820425..10820661 | 293..529 | 240 | 73.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:33:12 has no hits.
UFO10341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:35 Download gff for
UFO10341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta5R-RA | 85..1037 | 1..951 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:52 Download gff for
UFO10341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta5R1-RA | 85..1037 | 1..951 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:49 Download gff for
UFO10341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta5R1-RA | 85..1037 | 1..951 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:49 Download gff for
UFO10341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23308731..23309522 | 159..945 | 98 | <- | Minus |
| 2R | 23309579..23309732 | 1..158 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:52 Download gff for
UFO10341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19196254..19197045 | 159..945 | 98 | <- | Minus |
| arm_2R | 19197102..19197255 | 1..158 | 96 | | Minus |
