UFO10343.5prime Sequence
1105 bp (1008 high quality bases) assembled on 2011-12-08
> UFO10343.5prime
CAGTCGACATGGACATTAACCCAATAATCAGATCTATTCTCAGCCGCTTC
AGAGGCTGCACCATCAGAAGTTATCTGGTTGTTCTGCCCGATCAGAGTCG
CATAGAAAATCAACTAAAACTGGAGGATCTGCAAACAGAACGCGGAATCT
TGGATCTGCAATCCCATGAGCTGGCACTCAAGCAAAAGCGCGTCGAGGCC
AATCTAACCGACCTGACCCGCTGCATCCGTGGCATGGAGTTCGATGTGAA
GGTGAATTCCAATCGCGAGAGGAAGGAGAGAAAATCTGATCGACGCCCCC
CAGCTGATAAGAAATCACCCAAAGTCGGTGATTTCAGCGAAGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGA
GACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGGTTT
CACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCCGGAA
ATCGTCGTGATATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCAT
GGAAAACGGTGTAACAGGGTGACACTATCCCATATCACAGCTCACGTCTT
TCATGCCATACGAATTCGGATGAGCATTCATCAGGCGGCCAAGATGTGAT
TACGACGATAAACTTGGTGCCTATTTTCTACGTCTTTAGAAGCGTAATCA
GCTGA
UFO10343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10332-RA | 739 | CG10332-RA | 41..374 | 8..341 | 1655 | 99.7 | Plus |
| IM18-RA | 739 | CG33706-RA | 41..374 | 8..341 | 1655 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23601279..23601482 | 341..138 | 1020 | 100 | Minus |
| 2R | 25286936 | 2R | 23601550..23601622 | 138..66 | 350 | 98.6 | Minus |
| 2R | 25286936 | 2R | 23601674..23601733 | 67..8 | 300 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 229..289 | 908..968 | 133 | 72.6 | Plus |
UFO10343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:36 Download gff for
UFO10343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10332-RA | 35..380 | 1..345 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:58 Download gff for
UFO10343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10332-RA | 35..380 | 1..345 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:52 Download gff for
UFO10343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IM18-RA | 35..380 | 1..345 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:52 Download gff for
UFO10343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23601674..23601739 | 1..67 | 94 | | Minus |
| 2R | 23601279..23601482 | 138..341 | 100 | <- | Minus |
| 2R | 23601551..23601620 | 68..137 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:58 Download gff for
UFO10343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19489197..19489262 | 1..67 | 94 | | Minus |
| arm_2R | 19488802..19489005 | 138..341 | 100 | <- | Minus |
| arm_2R | 19489074..19489143 | 68..137 | 98 | <- | Minus |
