UFO10346.5prime Sequence
1086 bp (981 high quality bases) assembled on 2011-12-08
> UFO10346.5prime
CAGTCGACATGATTCGCGCCATGGTAATGACCAAATGGAGTAAGTCGGTG
GCGGGACCACTGGTCACGGCGTGGAACTACTCCACATTGAATCGGCTCAA
TGGCAATACTGTGCGCCCGCGTGCTCTGTTCCTGAATCTCGACCGCAAGT
TCTCCGCCGAAGGTGGCGGCGATGAGAAGCCCAAGAATGTGCCTCCCGGC
TTTGCGGCTCCAGGGTTTCCATCCACCTTGGGCAATAACCCAGAGAACAC
TACGCGTAAGGATGTGCCCATTGGCGAGGTGCAGGCGCCAACTATTTCCG
TAGTGAACGCAGGTGGTAAACTGGGCAGAGCCGAGCCACTGGAGGCCAGC
ACCATCGTGCGCAGCAAGGGCACTTCGAACGAGGACAAGATGACCGAGGC
GCAGAAGAAGGCATCGGAGGCCAAGGAGGCGGCCGCCAAGCAGTTGCAGG
ATGTCATGGCCAACTTGCCCAGCAAGGAGCAGACCGAAAAGTATTTCTTT
CGCGTGGTTGCCTTCTTCTATGACTTGACCTACCTAACCGCCACCTGGTT
GCTCAACTTTGTCGAGCACAATATCGTTCAAAATGCCAAGGTGCAGCACT
ACTGGAAGCGATTCCACGAAAAAATGGAGCAGGCCAAGAAGGATGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTGTAATTCATTAAGCATTCTGCGACATGAAGCATCACAA
ACGGCATGATGAACTGATCGCAGCGCATCAGCACTTGTCCGCCTTGCGTA
ATAATATTTGCCCATGTGAAACGGGGCGAGAAGTTGTCAACTGCCACGTT
AATTCAACCTGTCACTCACCCAGGGATTGCTGACAA
UFO10346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10063-RA | 827 | CG10063-RA | 110..745 | 9..644 | 3030 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6971661..6972229 | 644..76 | 2710 | 98.4 | Minus |
| 3L | 28110227 | 3L | 6972292..6972358 | 75..9 | 320 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:41 has no hits.
UFO10346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:33 Download gff for
UFO10346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10063-RA | 64..704 | 9..651 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:33 Download gff for
UFO10346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10063-RA | 110..750 | 9..651 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:37 Download gff for
UFO10346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10063-RA | 110..750 | 9..651 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:37 Download gff for
UFO10346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6971656..6972229 | 76..651 | 97 | <- | Minus |
| 3L | 6972292..6972358 | 9..75 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:33 Download gff for
UFO10346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6964756..6965329 | 76..651 | 97 | <- | Minus |
| arm_3L | 6965392..6965458 | 9..75 | 98 | | Minus |
