UFO10347.5prime Sequence
1068 bp (975 high quality bases) assembled on 2011-12-08
> UFO10347.5prime
CAGTCGACATGTCTGCAAATTCCAATTCACTAGAAATTTCACCGAATAGT
ACTTTAACTTTCACAAAAACCAACAATAAGCATGAAATAACCATCAAAAA
TGTTGGCGAAAAGACAGTGACCTACAAGGTGCAATGTACAGTGCATGGCA
AGTTCAATATAAAACCCCGCTGGGGAGTCCTCAGTCCCAATGAGCACTCA
CATGTCCTCATAACCATGTGCAAGGATGTCGAGCTCTCGAGAAAGGGACG
CGACAAGATAGTGGTCGTTTGCATGGTTTCACCCATCAATGCTGTGGACT
TCGAGATGACCGCCTCCTTCTGGCGTCACAATATCTGCTACGATCCAAGT
ATCGAGAAGCACCAACTCACCTGCCATCAAATGGATGGGGCGGGCGAGGG
CCATGGCGACGGAGGCGACAAGGATGCGGAGCCGGAGGATCTAAGGTTTC
GCCAGGGGTTATTCCCATCATTTTGCAGTATTCGCACTCCGAGCAAGTAC
TGGCGAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCATCAG
CACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGCGAGAG
TGTCATATGGCCACGTTAATCAAACTGGTGAACTCACCAGGATTGCTGAG
ACGAAAACATATTCTCATAACCCTTTAGAATAGCAGTTTCACCGTACCGC
ACATCTGCGATATATGTGTAGACTGCGATCGTCTGATTCACTCCAAGCCG
ATGAAACGTCAGTTGGCT
UFO10347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6527-RB | 1917 | CG6527-RB | 158..655 | 9..506 | 2445 | 99.4 | Plus |
| CG6527-RA | 856 | CG6527-RA | 158..655 | 9..506 | 2445 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10558366..10558745 | 506..127 | 1885 | 99.7 | Minus |
| 3L | 28110227 | 3L | 10558804..10558925 | 130..9 | 580 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:32:48 has no hits.
UFO10347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:33 Download gff for
UFO10347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6527-RA | 158..663 | 9..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:25:37 Download gff for
UFO10347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6527-RA | 158..663 | 9..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:40 Download gff for
UFO10347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6527-RA | 158..663 | 9..516 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:40 Download gff for
UFO10347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10558806..10558925 | 9..128 | 98 | | Minus |
| 3L | 10558366..10558743 | 129..506 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:25:37 Download gff for
UFO10347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10551466..10551843 | 129..506 | 99 | <- | Minus |
| arm_3L | 10551906..10552025 | 9..128 | 98 | | Minus |
