UFO10358.5prime Sequence
1073 bp (973 high quality bases) assembled on 2011-12-08
> UFO10358.5prime
CAGTCGACATGGTGAATATATCCACCATAAACTGGGTCTTCGTCTGCGGC
CTGTCCTTTTGCCTGGGCGGGATTGCGGTGCTCAGTCTCATGCCATTGGG
ATCAGACTGCGTGTGCCCGCTGTCCAATCCGCTGGCCAAGCTTGCCGGTG
GCGGAGAAGGAGTATCCGTGATTAAGAAAGAGCCAGCCGATGAGAAGCAG
CCACAGCCACATGACCACGGTGCGTCCGTACACAAGATGGCACTGCTGGT
GCCGTTTCGAGACCGATTTGAGGAACTCCTCCAGTTCGTCCCCCACATGA
CCGCCTTTTTGAAGCGGCAGGGCGTGGCGCACCACATCTTTGTGCTGAAC
CAGGTGGACAGGTTCCGCTTCAATCGCGCCTCTCTCATCAACGTGGGTTT
CCAGTTTGCCAGCGATGTGTACGATTACATTGCCATGCACGACGTAGACT
TGCTGCCCTTGAATGACAATCTGCTCTATGAGTATCCCAGCAGCTTGGGA
CCACTGCACATCGCCGGACCGAAGCTACATCCCAAATACCACTATGATAA
CTTCGTTGGAGGAATATTACTGGTGCGACGCGAGCACTTTAAGCAGATGA
ACGGCATGTCGAACCAGTACTGGGGCTGGGGATTAGAGGACGACGAGTTC
TTCGTGCGCATCCGGGATGCAGGACTGCAGGTGACGCGGCCGCAGAACAT
TAAGACTGGCACTAATGATACATTCAGCCATATTCACAACCGCTATCATC
GTAAGCGGGACACCCAGAAGTGCTTCAACCAGAAGAGATGACCCGCAAGC
GGGACCACAAGACGGGCCTGGACAACGTGAAGTACAAATACTTAAGTGCA
TGAGATGCTCATTGACCAGGTGCCGTGACCATCCTCACATTTTGCTCGAT
TGTGATGTAATAAACGCCTTGGTGCGACTGCTCGACGCAGCGGCTGCATC
GGCGTACAACGCAGCCTTTCTAGAACATTCGTTTGGCGCGCGGCCAGTAG
TTGTCATATTCATATTCATATCATAATCTATTCCACTAGGCTAGGAGATC
CTGCTCTGACTATGCTTGGATTC
UFO10358.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalT7-RA | 1099 | CG11780-RA | 115..1077 | 9..959 | 4510 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25023526..25024149 | 104..727 | 3105 | 99.8 | Plus |
| 3R | 32079331 | 3R | 25024213..25024429 | 724..933 | 740 | 95.9 | Plus |
| 3R | 32079331 | 3R | 25023370..25023466 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:33:34 has no hits.
UFO10358.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:37 Download gff for
UFO10358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalT7-RA | 89..1064 | 1..967 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:07 Download gff for
UFO10358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalT7-RA | 106..1081 | 1..967 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:58 Download gff for
UFO10358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalT7-RA | 106..1081 | 1..967 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:58 Download gff for
UFO10358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25023361..25023466 | 1..105 | 96 | -> | Plus |
| 3R | 25023528..25024149 | 106..727 | 99 | -> | Plus |
| 3R | 25024217..25024454 | 728..954 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:07 Download gff for
UFO10358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20849083..20849188 | 1..105 | 96 | -> | Plus |
| arm_3R | 20849250..20849871 | 106..727 | 99 | -> | Plus |
| arm_3R | 20849939..20850176 | 728..954 | 95 | == | Plus |
