UFO10362.5prime Sequence
1068 bp (980 high quality bases) assembled on 2011-12-08
> UFO10362.5prime
CAGTCGACATGTCCTCGCCAGCCCCCAAATCGCCGGAGCTTTCGGATAAA
AGCAAGAAATACGACAGACAAATCAGGCTGTGGGGAGAGCATGGACAGAC
GCTATTGGAGGCAGCCACAGTATGTTTGGTGAATGTTACGGCCGTCGGCT
GTGAAACTGCCAAGGGACTGGTGCTACCCGGTATCGGAGGCTTCACTGTG
GCCGATGGCAGCACCGTCAAGGAGGAGGATCTGGGCAACAATTTCTTCCT
CGATTCCAGCTATCTGGGCAAATCTAAAGCATTGGCTTGCATGCAACTTC
TCCAGGAACTCAATCCCGACGTAAATGGCGATTATGTCGACGAGAGTGCC
GACTTTTTGTTAGCCAACAGACCGAACTTCTTCGACAGCTTCGATTTAGT
GATTGCCTCCAATCTCAATGAGCAGACTTTGCTTCTCTTGGCCGAACGGT
TATGGGAGCTTAACGTTCCATTAATCTACTGCCGATCGCTTGGCATGCTG
GGCACAATACGCTTGCAAATACGGGAACACTGCATCGTGGAGGCGCATCC
GGATAATCGACAGTTTGATCTGCGTCTGGAGCATCCATTCGATGCTTTGC
GGGAGCATCTCGACGGCACCGAGGTGACCAGTAAGGTGCCCTGGCTGCTG
GTGCTTCACAAATATCTTAATGTGTGGCAAAAACAACAAGCGGATGGGAC
TCAAACGCCTCGAAATTACAAAGAGAAGAATCAGTTGAAGGAGACCATTA
GAGAGGAGATGAAGGCGGATGAGGAAAACTATGAAGAGGCCATCAAGGCG
GTCAATACAGCCTTTGGAGCGGGACAGGTTCCAAAAGCCTGAAAGCCATA
TTCGAAGATGATGCCTGCGAACAGTTAAACAAGAAGAGCAACGTCTTTTG
GATCATGGCCCAAGGCCCTAAAGCACTTTGTGATACATGAGATGAGGACA
TCTCCCTCTGCTGCGTCTGCGACATGACTGCATAACGACTCTATAATCGC
CTGCAGCACATTCTACGGCAACAGCCTGCAGACGCGAACAGTGTAATACC
AGTGCAAGAGTACTTAGC
UFO10362.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| APP-BP1-RA | 1867 | CG7828-RA | 274..1299 | 9..1024 | 4615 | 97.5 | Plus |
| APP-BP1-RB | 1650 | CG7828-RB | 57..1082 | 9..1024 | 4615 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11099031..11099676 | 242..886 | 3105 | 99.1 | Plus |
| 3L | 28110227 | 3L | 11098808..11098974 | 75..241 | 835 | 100 | Plus |
| 3L | 28110227 | 3L | 11098685..11098753 | 9..77 | 330 | 98.6 | Plus |
| 3L | 28110227 | 3L | 11099741..11099797 | 885..942 | 240 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:34:36 has no hits.
UFO10362.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:43 Download gff for
UFO10362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APP-BP1-RA | 266..1307 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:41 Download gff for
UFO10362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APP-BP1-RB | 49..1090 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:23 Download gff for
UFO10362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| APP-BP1-RB | 49..1090 | 1..1030 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:23 Download gff for
UFO10362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11098677..11098752 | 1..76 | 94 | -> | Plus |
| 3L | 11098810..11098974 | 77..241 | 100 | -> | Plus |
| 3L | 11099031..11099676 | 242..886 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:41 Download gff for
UFO10362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11091777..11091852 | 1..76 | 94 | -> | Plus |
| arm_3L | 11091910..11092074 | 77..241 | 100 | -> | Plus |
| arm_3L | 11092131..11092776 | 242..886 | 99 | -> | Plus |
