UFO10363.5prime Sequence
1127 bp (1012 high quality bases) assembled on 2011-12-08
> UFO10363.5prime
CAGTCGACATGTCCCAGGAAATCAATAGAAGCGCACAAGTGGTGCCCGCT
TGGCTCACTCGCGACTATGTGGAGCAGAAGCTGCGTTCCTACTTTAGAAA
TGACTCCCTCCGCCTGGTGAACCTGGACATCAAGCTGGCCCTTGGCAACG
GGGAGAACTACTCAAGCGTGATAACTCGCATCTATGTGGAGTATACGACG
GATAAATCAAAGGATAAACAATCCACCAGATTCCTGGTGAAAGAGAGTTT
CGCCGACGCAGGTCCGGCGGCGCAGGTTCTCCTGAGCTACGTAGTGTACA
ACAGGGAATTGGATCTGTATGAGCGCATCCTGCCCCAGATGGCGGAAGTG
GTGCGAAATGAGCTGGCAGATTCCCGGAAACTATTTGCAGGCACTGTTTA
TGTTGATCGGAAACGGGACTCGATCATCTTTGAGGATATGTCGCTGGAGA
ATTACAGAGTGGCCGATCGGCTCAAGAAACTGGATCTGGAGCACACTCAT
CTGGTACTCGAGAAGCTGGCCAATTTCCATGCAGCCGGAGCAGCCTTGGC
TGAGCGCCAGCCTGGAATCTTTGCGAAGAATTTCGATCGTGGATTCTTTA
ACCAGCATACCCGCGGCTACGAGCCCATCATGAAGAATCTTCTGATGGCT
TTGTCCCGATCCCTGGAGCTGGAGCCGGATCTGTGTCAGCGTTACCAGGC
AAAGATCGATCGATTGGTGGAGAACGTAATGGAGTACGGAGAACGATCGA
CGACCATTGTTCCCGGTGACTTTTTGACCCTGGCTCACGGGGATCTCTGG
ACCACCAATATTATGTTCCAATACGACGACAAAGGACATCCCATAAATGC
CATCTTTATCGACTTTCAGTTCAGTGCTTGGAACTCGCCGGGCCATCGAT
CTACACTACTTCTTTTCACGGGCCTTGCAGGCTGATATTCGACTGAAGAA
ACAGCCAGAGCTGGTTCAGTTCTACTATTACAACTGAAGCTGCCTTGAGA
AGGTCCAGTTATTCCGAATGTTCGAGCTATCGTCTTCATCAGCAGTCAGA
ACAGAATCTTCTATGCTGCCTCGCATCACTGATTCTTCGAACAACGATGA
CGTTAACTGCAGAAAGGCATCATTGGA
UFO10363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11891-RE | 1337 | CG11891-RE | 6..1097 | 14..1103 | 4750 | 96.5 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 1591..2682 | 14..1103 | 4750 | 96.5 | Plus |
| CG11889-RA | 2944 | CG11889-RA | 1613..2704 | 14..1103 | 4750 | 96.5 | Plus |
| CG11891-RD | 2922 | CG11891-RD | 136..900 | 153..918 | 940 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25271879..25272839 | 14..983 | 4435 | 97.6 | Plus |
| 3R | 32079331 | 3R | 25270366..25271130 | 153..918 | 915 | 74.9 | Plus |
| 3R | 32079331 | 3R | 25274004..25274752 | 165..914 | 730 | 73.5 | Plus |
| 3R | 32079331 | 3R | 25269008..25269552 | 369..914 | 610 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:34:43 has no hits.
UFO10363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:43 Download gff for
UFO10363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11891-RE | 1..1097 | 11..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:46 Download gff for
UFO10363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11891-RD | 1591..2682 | 14..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:27 Download gff for
UFO10363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11889-RA | 1613..2704 | 14..1103 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:27 Download gff for
UFO10363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25271879..25272931 | 14..1065 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:46 Download gff for
UFO10363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21097601..21098653 | 14..1065 | 96 | -> | Plus |
