UFO10368.5prime Sequence
1108 bp (960 high quality bases) assembled on 2011-12-08
> UFO10368.5prime
CAGTCGACATGTCCGCTCCGGTCCGCGGACTGGACGAGAGCAGCAAGGGC
GTCATAGCCGCCAGCAAGCGCAGCCAGCAGAAATTGCGTCGACGCAAGAT
CTTCACGAGAACGCCCTCGTCCTCCGTACCGCTCGATGTCATCGGGGACA
ACTCTACGTCCTCGTCCTCCGTCGCCGGAAACGCATCCAAGAAGGCTTTG
AATCGGGCACGCAGCGTCGTTGCACCCGATGTGATTACCCTGGTGTCCCT
GTTGAGTTCCGAGGGCAGCGACTCCGAGCGGGAGGATAACAGTTCAGTGG
CGGTATCATCGCCGCCAACTGGCGGGTCGGATAAACAAACATCGGGCGCC
TCGCAGCGAAGGGCGCCTTTGTTGAGGAAGACGGGCAAATCGGTCTCGTT
TCAAGACAGCTATCCGCCCACCTTCCAACTGGCCTCCAAGGAGTACTCGC
ACATGATACGCCGCGGTTCGATAGCACCTCTGGCAGCCCGAATCCGAGCC
AATCGACCGCCCACAGCGCCGCCAGTTTCCATTTTCCTAACCGACGTCCA
GGCCAAAATGGACCAGCAGCCGAAGAAGGAGGGTGGAGCTGACCCACCCG
TTGTCACCTTATCGCCGGACGAGGCCAAGAAGGAGAACAATAACAACGCG
GCCAATTGCGAGGACCAACAACCGCAGCCGGATCACAACTATCCGGCGTA
TGTGCGCAGTCTGAAGGAACGCGAGTGCTGGAAGTTGCACCAGAAGATGG
GAGCCAAAGGGCGTCAGTGTGAGCTATGAAACGGTGTTGAGGGGTATGCT
CACGCCCACCGAGTTCCGGCACTTTCAAAAGCAGCGGGAGCAGGAGGAGG
CCCGAGTTCTCGAGGAGGCGGAGCCGCCGAAGCGGCTGCTGCAGCCGCAA
TCCTTGAGAGCGGCGAAAAGGATGGTCGCAGCCTCAGTCACGGCATCGAA
CGCTCTCGGAAGCTCTGCTCAGAGCAGGCAGCTTTCTAGACATTCGGTTG
GCGCGCGGGCCCAGGTAGGTGGTTCATAAATCATAATCATAATCATATCA
TATCACACTAGCTTAGGGAGATTCTGATCATGAACTGGTGCCTTGGATTC
CCACAATA
UFO10368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13203-RD | 1617 | CG13203-RD | 352..1324 | 9..976 | 4680 | 99.2 | Plus |
| CG13203-RC | 2286 | CG13203-RC | 1021..1993 | 9..976 | 4680 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11376228..11376809 | 393..970 | 2600 | 98.8 | Plus |
| 2R | 25286936 | 2R | 11375534..11375918 | 9..393 | 1925 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:35:06 has no hits.
UFO10368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:45 Download gff for
UFO10368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13203-RD | 346..1329 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:56 Download gff for
UFO10368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13203-RC | 1015..1998 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:36 Download gff for
UFO10368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13203-RC | 1015..1998 | 1..981 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:36 Download gff for
UFO10368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11375528..11375918 | 1..393 | 98 | -> | Plus |
| 2R | 11376229..11376809 | 394..970 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:56 Download gff for
UFO10368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7263033..7263423 | 1..393 | 98 | -> | Plus |
| arm_2R | 7263734..7264314 | 394..970 | 98 | == | Plus |
