UFO10369.5prime Sequence
1100 bp (962 high quality bases) assembled on 2011-12-08
> UFO10369.5prime
CATCGACATGAAAACAAGCAATCTCGGCCTGTACGCTTTCCGTTTAACCT
TCGGTCAGGCGCCGACGTTGTCCACACAGGCCACGACGCACTGCAGCCAT
GGCTTCACCACCAGCTCGTCGTCGCCCAACCGTGTGGTGACCCGCTCTGC
CACCATGCTGGCGCTCTTCGGCATCGCGCTGTCCTCGTTCAGCCTTAAGC
AACTGCTGGCCAAGAAGCAGAAGCACCAGGGCCTGCGCAAGCTCGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGC
CTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCC
ATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGC
TGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGT
TTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGG
AAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTC
ATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATTATCACCAGCTCA
CGTTCTTTCATTGCCATACGAAATTCCAGATGAGCATTCATCAAGGCGGG
CAAATGGTGATTAAGGCCGGAATAAACTTGTGCTTTTTTTTTCTTTACGG
TCTTTAAAAGGCCGTATATTCCAGCTGAACGGTCTGGTTATAAGGTTACT
TGGAGCACTGAACTGGAATGCCTTCAAATGTTTCTTTACGATGCCATTTG
UFO10369.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33199-RB | 1523 | CG33199-RB | 211..448 | 7..244 | 1190 | 100 | Plus |
| CG33199-RA | 1091 | CG33199-RA | 211..448 | 7..244 | 1190 | 100 | Plus |
| CG8229-RE | 1951 | CG8229-RE | 1121..1308 | 57..244 | 940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8948756..8948944 | 244..56 | 945 | 100 | Minus |
| 2R | 25286936 | 2R | 8950705..8950757 | 59..7 | 265 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 813..880 | 123 | 68.1 | Plus |
UFO10369.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:46 Download gff for
UFO10369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33199-RA | 221..466 | 1..244 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:00 Download gff for
UFO10369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33199-RA | 203..448 | 1..244 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:39 Download gff for
UFO10369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33199-RA | 203..448 | 1..244 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:39 Download gff for
UFO10369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8948756..8948941 | 59..244 | 100 | <- | Minus |
| 2R | 8950706..8950759 | 1..58 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:00 Download gff for
UFO10369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4836261..4836446 | 59..244 | 100 | <- | Minus |
| arm_2R | 4838211..4838264 | 1..58 | 93 | | Minus |
