UFO10374.5prime Sequence
1076 bp (970 high quality bases) assembled on 2011-12-08
> UFO10374.5prime
CAGTCGACATGGTGTACCCAGTGCGGAACAAGGACGATCTTGACCAGCAG
CTAATCCTCGCCGAGGACAAGCTGGTGGTAATTGATTTTTATGCAGACTG
GTGCGGACCTTGCAAGATAATAGCACCCAAGCTGGACGAACTGGCGCAGC
AGTACTCGGACCGTGTCGTCGTACTCAAGGTGAACGTGGACGAGAACGAG
GACATTACGGTCGAATACAATGTGAATAGCATGCCCACTTTTGTGTTCAT
CAAGGGCGGCAATGTGCTGGAGCTCTTCGTTGGCTGCAATTCCGATAAGC
TGGCCAAATTGATGGAGAAGCATGCCGGCGTTTATACCGATGAAGCGGCC
GACGTTAAGGCCGTCCATATCGATGGCGAATGCATTGTCGATCTGACCGC
CGAGTCCAGTGAAAGCGACAACGACAACAACAACGTTAATGAGGTGTCCG
CCCACGACGAGAATGCCGTTCTGGAGCACGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGGTGAAAACGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAACTGTGAAACTCACCCAGGGATGCTGAAACGAAAACATATCTCA
ATAAACCTTTAGGAAATAGCCAGTTCACGTAACACGCCCATCTGCGAATA
ATGTGTAGAACTGCGAATCCGTCGTGTTATCACTCGAGCGATGAACGTCA
GTGCTCATGAACGGTTACAGGTGAAC
UFO10374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TrxT-RB | 1104 | CG3315-RB | 44..515 | 8..479 | 2360 | 100 | Plus |
| TrxT-RA | 1108 | CG3315-RA | 44..515 | 8..479 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5311241..5311712 | 479..8 | 2360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:35:41 has no hits.
UFO10374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:48 Download gff for
UFO10374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TrxT-RA | 40..520 | 1..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:15 Download gff for
UFO10374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TrxT-RA | 40..520 | 1..485 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:53 Download gff for
UFO10374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TrxT-RA | 40..520 | 1..485 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:53 Download gff for
UFO10374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5311241..5311715 | 1..479 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:15 Download gff for
UFO10374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5205274..5205748 | 1..479 | 99 | | Minus |
