UFO10375.5prime Sequence
1075 bp (953 high quality bases) assembled on 2011-12-08
> UFO10375.5prime
CAGTCGACATGTCTGTTTCCAACAAGGCGGAACCCAAATCACCAGTTAAA
AAGGTCAACATGGACACAACGACTGCAATCCCAGAGGGCACCGCTTTATG
CCGCTACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAAGCACGAGG
AGGTGTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCGATGCCTCC
AAGCAGCGGATCGAGGGCACCGAGGCCGCGGCGTTCAATATGAAGTCGAA
GGGCAATCGCAACCGTTCAACTTACAGTAGTGCTGCCCAGCAGAAGGGTC
TGACCACTGGAGTGAAGAAGAACAACTGGCGTAAGAAGCACGAGGACTTC
ATTCAGTCGATTAGAGCGGCCAAGCAGGTGAAGGCGCACTTGGCGCGCGG
CGGCAAGTTGAGCGACCTGCCACCACCGCCACCTTCGGAGAATCCAGACT
ATGTCCAGTGTCCCCACTGTGGTCGCCGATTCAACGAACAGGCTGCGGAG
CGTCATATCCCCAAGTGCGTTAACATGGTGCACAACAAGCCCCGTAACGG
TCCGCCGGCCAAGAGGCGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTTCATTAAG
CATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACTGAATCG
CCAGCGGCATCAGCACGTGTCGCCTGCGTATATATTTGCCCATGTGAAAC
GGGGGCGAGAGTTGTCCATATGCCACGTTTAATCAAACTGTGAACTCACC
CAGGATTGCCTGAACGAAAACAATCTCATAACGTTAGAATAGGCAGGTCA
CCGTACACGCCAATCTTGCAATATT
UFO10375.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42675-RD | 644 | CG42675-RD | 19..579 | 9..569 | 2805 | 100 | Plus |
| CG42675-RG | 1448 | CG42675-RG | 840..1383 | 26..569 | 2720 | 100 | Plus |
| CG42675-RF | 1834 | CG42675-RF | 1226..1769 | 26..569 | 2720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5818248..5818755 | 62..569 | 2540 | 100 | Plus |
| 3R | 32079331 | 3R | 5818134..5818188 | 9..63 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:35:49 has no hits.
UFO10375.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:49 Download gff for
UFO10375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RD | 19..579 | 9..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:20 Download gff for
UFO10375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RD | 19..579 | 9..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:57 Download gff for
UFO10375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RD | 19..579 | 9..569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:57 Download gff for
UFO10375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5818134..5818187 | 9..62 | 100 | -> | Plus |
| 3R | 5818249..5818755 | 63..569 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:20 Download gff for
UFO10375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1643856..1643909 | 9..62 | 100 | -> | Plus |
| arm_3R | 1643971..1644477 | 63..569 | 100 | == | Plus |
