UFO10378.5prime Sequence
1108 bp (979 high quality bases) assembled on 2011-12-08
> UFO10378.5prime
CAGTCGACATGAGATCCCTGGCCAACCAGGAGGATGGCGCCATAAAGGAC
GAGCCGCCGAGCGACGACGAGCCCGCACAGCCCGCCAGAGATCGCGTCCC
GCCAATTTCCCGCGGAGCAGCGCCCGCTAGCTCATCCTCCGTATCCGCGG
GCCTGGGCGCAGGCGAGACTGACTTCAAGGAGCGCTACAAGAACCTCAAG
AAGAAGCTGAAGTTCCTCATCTATGAGAACGAGTACTTCCAGGATCTATT
GCACACCAACCAGCGGCGTCTGCTGAAAGTTTCCCGGGATCGTACCTTCC
TGCTGGACCGTCTGCTGGTGTACGAGAAGCCGGCCAAGGACTCTAGCGAC
TCGGATGCCACCGACAGCTCCGATTCGGAGCCAGCTTCTACGTCCGGCGT
TGCCGGCGGATCGCAAACATCCAAGGACGCCATTCGGCGCAAGCACAAAG
ACAAGGGGGCACCAGGAATTCCAGGTGTGCCTCCGCACATGCCCACAGTG
GGCGCCCCACGAGGTCGAAGACGAAAAATCCTAACCGGAATGTTGCCCGC
GAACCATGGAATCCCAGCAATTGCTGCGAAAAAACAACTTACCGCCACGG
TGTCACCTTCGCAGCAGCCACCGCAACTACAGACTGCACCGAAGGATGTG
TCGCCCGGCCTCAGCCAAGCGGAGATTGCCCGCCAGCTGCAGGAGCGACG
ACCGACGCCGTTGGAGCTATTGAGTCCGGAATGCACTTCGGCCACCGTGC
CCACAACGATGCTCAGCGATGAAAGCCCCTCTAAGTGTTATCCCAATGAA
AGCCTGCAGCATCTGATGGAGGACGACTCTCACTCGCACGAGTGGCCGCC
GAGGAGTGCGTGCCCCATGGAGTACACAAGTGCAAGCTTTCTAGACCATT
CGTTTGGCGCCGCGGGCCCAGGTAAGTGGTTCATAATCATAATCATATCA
TAATCATAATCACAACTTAGGCTAGGAGGATCTGGTCATGACTAGTGCTG
GAATTCTCCACAATAAAAAAACGCCCGCGCACGAGCGTTCTGAACAATTC
AGAATGAGTTCTGAAGTCATACTGATCTATCAAGGAGTCCAGCGAGCTCG
ATATCACT
UFO10378.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18004-RB | 1168 | CG18004-RB | 225..1097 | 9..881 | 4305 | 99.7 | Plus |
| CG18004-RA | 1044 | CG18004-RA | 104..973 | 12..881 | 4290 | 99.7 | Plus |
| CG18004-RD | 1026 | CG18004-RD | 104..955 | 12..881 | 4010 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10885590..10886152 | 225..787 | 2800 | 99.8 | Plus |
| 2R | 25286936 | 2R | 10885320..10885533 | 12..225 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 10886210..10886304 | 787..881 | 380 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:36:05 has no hits.
UFO10378.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:50 Download gff for
UFO10378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RB | 218..1104 | 1..889 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:27 Download gff for
UFO10378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RB | 218..1104 | 1..889 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:03 Download gff for
UFO10378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18004-RB | 218..1104 | 1..889 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:03 Download gff for
UFO10378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10885313..10885532 | 3..224 | 98 | -> | Plus |
| 2R | 10885590..10886152 | 225..787 | 99 | -> | Plus |
| 2R | 10886211..10886311 | 788..889 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:27 Download gff for
UFO10378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6772818..6773037 | 3..224 | 98 | -> | Plus |
| arm_2R | 6773095..6773657 | 225..787 | 99 | -> | Plus |
| arm_2R | 6773716..6773816 | 788..889 | 94 | == | Plus |
