UFO10380.5prime Sequence
1075 bp (947 high quality bases) assembled on 2011-12-08
> UFO10380.5prime
CAGTCGACATGTCTGTTCGCAACTCACGCCCCCAGTTATCGTGGCCGGAG
CGGGTAAGTCCGCAAAGGACTATTGACACTCCAACGGCATCCGGAGAAAT
GTTGACTCGTCGTCAATCGGCACCAGCGTTGGTCGTGCCGCCGGAGGAGA
CCACGCACGTTGTGGTGGTCAAGCGGCAATCCCCGGACGCAGCCGCTGCC
GGAGAACTGGTGCCGTCTAGGCGGAAGGACTCGGTGGCTGTGCAGTCGGG
AATTGTGGCCACTGGGCCATTGGACACAACACGCAGTGGTGCAAGAGACG
ATTTTCTAATGGCTTTGCTCGAGTGCCCGGTGTGCTTTGGCTACATAATG
CCGCCAATTATGCAGTGCCCGCGTGGCCACCTCATCTGCTCCACCTGCCG
CTCAAAGTTGACCATTTGCCCCGTCTGCCGGGTGTTCATGACCAACATCC
GCAGCCTGGCAATGGAGAAGGTGGCCTCCAAGCTGATCTTTCCCTGCAAG
CATTCGCATTTCGGCTGCAGAGCGCGGCTCTCTTACGCAGAGAAGACCAA
GCACGAGGAGGATTGCGAATGCCGTCCGTACTTCTGCCCGTATCCGGATG
ACAAGTGCTCCTGGCAGGGACCGTTGAGGGACGTATACCAGCACCTGATG
AGCTCCCACGAGAACGTGATCACCATGGAGGGCAACGACATCATCTTTTT
GGCCACCAATGTGAATCTGGAGGGTGCCCTCGACTGGACAATGGTGCAGT
CCTGCCATGGGCGGCACTTCCTCCTCTCGCTGGAGAAGATCAATTTGGGA
GAGGACTGTCAGCAGTACTTCACCGCCTGTCGGATGATCGGCTCCATGAA
GGATGCCGCCGAGTTCGTGTATAACATCTCCTTGGGAGGCCTATAATCGC
ACTCTCCGCTGGCAATCCAAGCCAAGATCATCCGTGAGACTTCTCCTCGT
CACAACGCGACTCCTGTGCTCAATAGCACCACCGTCGAACTGTTCTCTGA
GAACGGTAATCTGCCTGACGTGATCATAGAGGTGGAGACGTACACCGAAA
GCCTTTAACATTCGTTTGGCGCGCG
UFO10380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sinah-RC | 1450 | CG13030-RC | 179..1188 | 9..1012 | 4795 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16859258..16860267 | 9..1012 | 4590 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:36:22 has no hits.
UFO10380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:52 Download gff for
UFO10380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sinah-RC | 174..1206 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:36 Download gff for
UFO10380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sinah-RC | 174..1206 | 1..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:08 Download gff for
UFO10380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sinah-RC | 174..1206 | 1..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:08 Download gff for
UFO10380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16859253..16860285 | 1..1027 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:36 Download gff for
UFO10380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16852353..16853385 | 1..1027 | 98 | | Plus |
