UFO10384.5prime Sequence
1074 bp (960 high quality bases) assembled on 2011-12-08
> UFO10384.5prime
CAGTCGACATGGACTCGCAGGAGGGTACTCAGTGCCAGATCCTGGCCATC
GTCATTCGGGTGTGTGTGTTTAGCGCGTTAACGTACTACACTGCCAAATG
GATGATCAATGCGCTGGATCCCAATAATAAGATCCGGGGTAAGGCGAAAT
ATGTTGCGGAAGAGCAGCTGCGCAAGCTGAACTCCTCGGCGATTGGCGCG
GCAAAGAAGTTTCGAGCCCGTGACTTTAATGAGCACGAGATGATGATTGC
TTCGCATCTGGTGACGCCTGAGGACATTGATATCAGTTGGTCGGATATTG
CCGGACTGGATGGGACTATTCAGGAGCTTAGGGAGACGGTGGTTCTCCCA
GTGCGTCATCGTAAGCTCTTTAGCCGATCGAAACTGTGGCGAGCGCCCAA
GGGAGTCCTGCTGCATGGACCGCCTGGTTGTGGCAAGACCCTGATCGCCA
AGGCCATTGCCAAGGATGCTGGGATGCGATTCATCAATCTGGACGTGGGT
GTGCTAACGGACAAGTGGTACGGCGAAAGCCAGAAGCTGGCCACAGCCGT
TTTCACGCTGGCCAAAAAACTTCAGCCCTGCATCATCTTCATAGACGAAA
TTGAATCTTTTCTCAGGATGCGCGGTAGCAATGATCACGAGGCAACCGCC
ATGATTAAGACTCAGTTTATGTTGCAGTGGGATGGGTTAATGAGCAATAC
CAACATTTGTGTCCTCGTTTTGGGGGCCACAAACCGGCCGCAAGACCTCG
ATAAAGCCATCCTGCGCCGTATGCCCGCACAATTTCACATTGGAGTGCCG
CGAGACTGCCAGCGACGCGAAATCCTTCAGTTGATCCTCCAGACAGAGCA
ACTGAGTCTTTCGGTTAATCTGAAGGAGCTGGCCCGACTGACGATTGATT
TTCAGATCCGATTTGCGGGATTGTGTCGCCACGCATCCATGTACGTATGC
GCAGTTTATGCGCGAAAGCTGACACGGCGAGTAATTGAAAAGAAAAGATT
GATGGACTTCAGGTTAAGATCAGGCTGCAGGATGGGAGCACTGTATCCAA
TGAAGACCTTCCCAGGTCGCTGTC
UFO10384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4701-RA | 1318 | CG4701-RA | 100..1187 | 9..1074 | 4800 | 97.2 | Plus |
| nmd-RC | 1719 | CG5395-RC | 392..902 | 283..793 | 335 | 71.5 | Plus |
| nmd-RB | 1172 | CG5395-RB | 264..774 | 283..793 | 335 | 71.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14766007..14766970 | 9..967 | 4555 | 99.4 | Plus |
| 2L | 23513712 | 2L | 10302990..10303500 | 793..283 | 335 | 71 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:35:37 has no hits.
UFO10384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:48 Download gff for
UFO10384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4701-RA | 100..1087 | 9..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:13 Download gff for
UFO10384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4701-RA | 100..1087 | 9..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:51 Download gff for
UFO10384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4701-RA | 100..1087 | 9..987 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:51 Download gff for
UFO10384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14766007..14766990 | 9..984 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:13 Download gff for
UFO10384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14766007..14766990 | 9..984 | 98 | <- | Plus |
