UFO10386.5prime Sequence
1073 bp (976 high quality bases) assembled on 2011-12-08
> UFO10386.5prime
CAGTCGACATGCTTTTAATAAGGAGTCTAGTAATTGTGTTTTTAGTAGCG
ATAAGCGAGTTCGATCGAAACTTTGCCATAAACCATGACAATGCTGGAAT
AGTTCTAAGGGAAATAAACAAGAGAAGAGATCGCCATGGAGTCCCAAAAT
TGACATTGGACAACGTGCTCAGTAAGGGATGCCAAAGTTATGCTTGGAAA
CTGTCCAAGTCGGCGACTCTTAACTATTCGGACCCCACTAACAAGGATTA
CACAGAAAGCATCTGCAGATTTGAAGTAAAGAGGGGAGCACTGTCGAGAT
GTGTCAAGAACTGGTATAATGGAAGGAAGTTCGATATTTTAGACCCCAAG
GCTAAAGATTTTACTGCCATGATTTGGAGGTCGTCCGTTTCCTTGGGATA
TGGCGACGCTAACATAAATGCTCTTCAAGGGGTTTTCGTGGTCAGATATA
CTCCACCTGGGAATGTGAAAGGATTATACACGGATAATGTTCCTCCCAGG
AAAAGAAAACAAAAGAAAAAAAAGAGGGAAAACAAACAAAAAGAAGACTG
TGCGAGTCGTCAGGATAATCGATATGTCTTATTGTTGTCCATTCTTTCCT
TGGTGTCTACTAATTGGCAAAGTGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCGACATGGAAGCCATCACAAACGCATGATGACTGATC
GCAGCGCATCAGCACCTGGTCGCCTGCGTATAATATTGCCCATGTGAAAC
GGGGCGAGAGTGTCATATGCCACGTAATCAACTGTGACTCACCCAGATTG
CCTGAACCGAAACATTCCCATTA
UFO10386.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31286-RB | 1834 | CG31286-RB | 91..705 | 9..623 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6641621..6641842 | 197..418 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 6641426..6641565 | 58..197 | 700 | 100 | Plus |
| 3R | 32079331 | 3R | 6641907..6642032 | 419..544 | 630 | 100 | Plus |
| 3R | 32079331 | 3R | 6642084..6642162 | 545..623 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 6641322..6641372 | 9..59 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:36:32 has no hits.
UFO10386.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:52 Download gff for
UFO10386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31286-RB | 91..705 | 9..623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:41 Download gff for
UFO10386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31286-RB | 91..705 | 9..623 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:11 Download gff for
UFO10386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31286-RB | 91..705 | 9..623 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:11 Download gff for
UFO10386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6641322..6641372 | 9..59 | 100 | -> | Plus |
| 3R | 6641428..6641565 | 60..197 | 100 | -> | Plus |
| 3R | 6641622..6641842 | 198..418 | 100 | -> | Plus |
| 3R | 6641907..6642032 | 419..544 | 100 | -> | Plus |
| 3R | 6642084..6642162 | 545..623 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:41 Download gff for
UFO10386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2467044..2467094 | 9..59 | 100 | -> | Plus |
| arm_3R | 2467150..2467287 | 60..197 | 100 | -> | Plus |
| arm_3R | 2467344..2467564 | 198..418 | 100 | -> | Plus |
| arm_3R | 2467629..2467754 | 419..544 | 100 | -> | Plus |
| arm_3R | 2467806..2467884 | 545..623 | 100 | == | Plus |
