UFO10387.5prime Sequence
1096 bp (961 high quality bases) assembled on 2011-12-08
> UFO10387.5prime
CAGTCGACATGTGCGGTTATGGATGCGGTCCCTATGGCTATGGACCTTCG
GGTCCTTGCGGACCATGGTGCGGACCCTGGTGTAGTCCTTGTGCCCTCTC
GCTAGGACCCTATTCCTGCTGTGGACCCAGTGGATGCGGACCAAGCGGCC
CAGCGTGTTGGCCGTATGGCTTGTACACCTGCGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACG
TTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAA
CATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAAC
ACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGG
TATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGT
GTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTG
CCATACGAAATTCCCGGATGAGCATTCATCGGCGGGCAAGAATGTGAATA
AAGGGCGGATAAACTTGTGCTTTATTTTTTCTTTACGGTCTTTAAAAAAG
CCGTAATATCCAGCTGACGGGTCTGGTTATAGGTACATTGAGCACTGACT
GAAATGCCTCAAATTGTTCTTACGATGCATTGGATTATCAACGTATATCG
TGAATTTTTTCTCCATTTTAGCTCTAGGCTCTGAAAGATTCTACCT
UFO10387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31639-RB | 633 | CG31639-RB | 214..387 | 9..182 | 870 | 100 | Plus |
| CG31639-RA | 487 | CG31639-RA | 132..305 | 9..182 | 870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6154702..6154875 | 182..9 | 870 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 751..818 | 123 | 68.1 | Plus |
UFO10387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:53 Download gff for
UFO10387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31639-RB | 154..345 | 1..196 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:45 Download gff for
UFO10387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31639-RA | 141..332 | 1..196 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:15 Download gff for
UFO10387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31639-RA | 125..316 | 1..196 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 01:11:15 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 16:27:45 has no hits.
