UFO10388.5prime Sequence
1073 bp (942 high quality bases) assembled on 2011-12-22
> UFO10388.5prime
CAGTCGACATGAAGCTGATCGCATTGTGCTGCCTGCTCCTTTTGGGCCTC
CTGGGCTTCCTAGCTGCTCCCGGCGTCGCCTCGCCATCTCGCCACACTGG
ACCAGGAAACGGATCGGGATCTGGAGCTGGGTCCGGAAATCCGTTCAGGT
CTCCAAGCTCACAGCAACGACCACTGTACTACGACGCTCCGATTGGGAAA
CCATCGAAGACTATGTACGCCGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCT
TGCGAATATATGTGTAGAAACTGCCGGAAATCGTTCGTGGTTTTCACTCC
AGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAGGGT
GAACACTATCCCATATCACAGCTCACCGTCTTTCATTGCCATACGAAATT
CCGGATGAGCATTCATCAGGCGGGCAGAATGTGAATAAAGGCCCGAAAAA
ACTTGTGCTTAATTTTTCTTTACGGTCTTTTAAAGGCGTACATCAGCTGA
CCGGTCTGGTATAAGTTACATGAGCACTGACCTGAATGCTCCAATGTCTA
CGATGCCAATGGATATATCACGT
UFO10388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10332-RA | 739 | CG10332-RA | 483..696 | 8..221 | 1070 | 100 | Plus |
| IM18-RB | 286 | CG33706-RB | 30..243 | 8..221 | 1070 | 100 | Plus |
| IM18-RA | 739 | CG33706-RA | 483..696 | 8..221 | 1070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23600957..23601170 | 221..8 | 1070 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:27:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 217..289 | 780..848 | 130 | 68.5 | Plus |
UFO10388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-22 14:07:27 Download gff for
UFO10388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10332-RA | 479..696 | 1..221 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:45 Download gff for
UFO10388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10332-RA | 479..696 | 1..221 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:21 Download gff for
UFO10388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IM18-RA | 479..696 | 1..221 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 21:22:21 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 17:51:45 has no hits.
