UFO10389.5prime Sequence
1119 bp (999 high quality bases) assembled on 2011-12-22
> UFO10389.5prime
CAGTCGACATGAACCAATACTTTTTGACGGGCTTGCTTTTGGTGCTAGGA
GTAGTACTACATATAGACTGGACAACAGCCAAACCTCCGGCGAAAAAGGC
GGATCAGCTGCCATCCTTTCTTAAGGTATGCCATCGCAATGCACCCGACC
TAGACACCTGTGTTCGAGAATCTTATGAGGAACTACGTCCAAGGCTTATG
GAAGGTATACCAGAGCTATATATACCTGCCATGGAGCCGCTGGTTGTTCC
TCAGGTCAAGATGGACCAGGACTCCGGGGCCATATATTTGCACTCAGTGT
ACCGAAATGTCAAAGTCACAGGCATCTCAAAGCACACGGTCAATGAGCTG
CGTCTGGAGCCTTCAAAACTCAAGTTCATTTTGTCTCTGACCTTCCCAAA
GCTGCATATGGAATCGGACTACAGCATTAAGGGAAAAATTATGATGATGC
CACTTTTGGGCGATGGCCACTGTAAGGTGGATCTCGTTAACATCACCATG
CGAACCGAGCTGATTGGACAGGAGTACAAAAAGAATGGAGCCAACTTTTT
GAAGATCAACACTGTGAAGGTCAAGTACGAGCTATCTGATGTCCACATTC
ATCTGGATAACCTTTTCAACGGGGATAAAGCTTTGGGTGATCGCATGAAT
GAGTTCCTCAACGAGAACTGGAAGGCACTGGCCGAGGAAGTGCGTCCGTT
GATGACCAAGCGCTGGTGGACATTTTGAGGGCCTCCGTGGATAAATTGTT
TGCTTCTTTTAGCTACGATGATCTGCTTCCCATGGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACCAACTAGCCTAGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCGGCGGCCAACCGAGCGTTCTGAAAC
AAATCCAAATGGAGTTCTGAGTTCATTACTGGATCTATCAACAGGAGTTC
AAGCGAGCTCGATTTCAAATTACGCCCCGGCTGCACTCATCGCAGATACT
GGTGTAAATCATTAAGCATTCCTGCCGACTGGAAAGCCATTCAACAACGC
ATGTATGACCCTGAATCGC
UFO10389.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10407-RB | 1113 | CG10407-RB | 222..998 | 9..784 | 3800 | 99.4 | Plus |
| CG10407-RA | 954 | CG10407-RA | 63..839 | 9..784 | 3800 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16045354..16045674 | 432..112 | 1590 | 99.7 | Minus |
| 3R | 32079331 | 3R | 16044862..16045161 | 784..486 | 1405 | 98.7 | Minus |
| 3R | 32079331 | 3R | 16045807..16045909 | 111..9 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 16045217..16045277 | 490..430 | 290 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:27:41 has no hits.
UFO10389.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-22 14:07:28 Download gff for
UFO10389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10407-RA | 57..842 | 1..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:49 Download gff for
UFO10389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10407-RA | 57..842 | 1..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:24 Download gff for
UFO10389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10407-RA | 57..842 | 1..788 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:24 Download gff for
UFO10389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16044858..16045160 | 487..788 | 98 | <- | Minus |
| 3R | 16045221..16045275 | 432..486 | 100 | <- | Minus |
| 3R | 16045355..16045674 | 112..431 | 99 | <- | Minus |
| 3R | 16045807..16045915 | 1..111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:49 Download gff for
UFO10389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11870580..11870882 | 487..788 | 98 | <- | Minus |
| arm_3R | 11870943..11870997 | 432..486 | 100 | <- | Minus |
| arm_3R | 11871077..11871396 | 112..431 | 99 | <- | Minus |
| arm_3R | 11871529..11871637 | 1..111 | 96 | | Minus |
