UFO10390.5prime Sequence
1081 bp (942 high quality bases) assembled on 2011-12-08
> UFO10390.5prime
CAGTCGACATGTTCGAATGCATAAGTTTCTTGTTCCTGGCTGCCTTGGCC
TTCGTGGCCTGGGCCGTTCTCTGCTTCCAGCACTTCGTCCAGGTCCAGAC
GCGGCTCTCCTCTGATTTCCGAGTCGAATTATACACAGAGCGTCCTGGGA
TTACGTTTGAGCCGCAGCTGTGCCACAGTCCCTCAGAGCAGAGTAGCTCC
GACAGCTCCGACAGCACCTACCAGTTTGCGACGAGCTTCGGCGTGATCTT
TGCCCTGACCTTTGGTCTGTCCAAGCTGCTCCAACTGGCGGAGCTGCAGG
CCAAAAGGTATTTCAAGAGCAAAAAGGCGCTGCATCCCAAATCTGCTGCC
AAAGTGCAGGATCTAGTTGTTGAGCAGAAGGCGCCAAGCCAGCAGGACGA
TTCGAATCCCTTCGATCTCCTGCAGGACCACAATGAAAATCTGAAGGAGC
AGCTCAGTATCCTGCAGTTGCAGTGTCTGGAAATGCGCGAACTTCTGCAC
GAGCTGGATATCAGCAGTAGCTCCAGTAGCTATGGAAGTGTCAGATCCGG
AAACCGGGTAGCAATGGCCAAGTCCTCCGAAGAATCAATGGTGGTGTGGA
GGCGATCGGACTCCCTGACCGGTACGGTCTCCGGCTCATTGCACGCCGAA
AAGGTCAACTCCCCCTCCACACAAAACATCTACATTACCAACAGCCACTT
CCACATCAACGGACAGGTCTACCTGACCGAGAACCACGTGAACGTCGAGC
TCACCCAGAACGCTTCTTTGTTCGGTCGGGGGCAGAGCGAGTTCCTGCAG
GTGGCGGGAAGGTTCATCTCCGGACCAAAGAAGATGCCCATGTTAACGGG
CATGCGGTGCCACAACATCCTCATAGCAAGCTTTCTAGACCATTCGTTTG
GCCGCGGCGGGCCCAGGTAAGTGTCATAATCATATCATAATCATAATCAT
AATCACACTAGCCTAAGGAGATCCTGGTCATGACTAGTGCTTGATCCCCA
CCATTAAAAAACGCCCGCCGCATCGAGCGTCTGAACAATCAGATGAGTTC
TGAGTCATACTGGATCTATCACAGGATCAGG
UFO10390.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7202-RA | 986 | CG7202-RA | 67..934 | 8..875 | 4310 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21491451..21492191 | 875..135 | 3675 | 99.7 | Minus |
| 3L | 28110227 | 3L | 21492577..21492707 | 138..8 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:36:46 has no hits.
UFO10390.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-08 11:28:54 Download gff for
UFO10390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7202-RA | 67..934 | 8..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:50 Download gff for
UFO10390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7202-RA | 67..934 | 8..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:18 Download gff for
UFO10390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7202-RA | 67..934 | 8..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:18 Download gff for
UFO10390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21491451..21492187 | 139..875 | 99 | <- | Minus |
| 3L | 21492577..21492707 | 8..138 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:50 Download gff for
UFO10390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21484551..21485287 | 139..875 | 99 | <- | Minus |
| arm_3L | 21485677..21485807 | 8..138 | 100 | | Minus |
