UFO10401.5prime Sequence
1143 bp (1023 high quality bases) assembled on 2011-12-19
> UFO10401.5prime
CAGTCGACATGGCCGTCAGCTTCGAGAAGAATCGGGCGCAAATAGTGGCC
GCCTGGAAGGATGTGCTGGACGATAAGAGCGACACGAACTGGTCCCTCTT
TGGCTACGAGGGTCAGACCAACGAGCTGAAGGTGGTGGCCACCGGCGATG
GCGGCGTGGATGAGCTAAACGAAGACCTAAATAGCGGCAAGATTATGTAC
GCCTTCGTCCGAATCGAAGACCCCAAAACGGGCCTCAACAAGTACTTGCT
CATCAACTGGCAGGGCGAGGGCGCACCTGTTCTACGCAAGGGTACCTGCG
CCAACCACATACGTGATGTGAGTAATTTGCTGTCCGGCGCTCACCTTACC
ATCAATGCCCGGAACGAGGACGATATTGACTTGGATCGGCTTCTCAAGAA
GCTGAGCACCGTGAGCTCAGCCTACAGCTTTAAGGAACCTCGAGGCGCCA
TGGAGGAGCAGAAGGCGCCGGTGGGAACCAACTATACTCGGGTCATTCCC
ACCAAGGAGTTAAACGCCAGCGTTATGCAGGACTTCTGGAAAAAGGAGGA
GGCCGAGGAGAAATTGCGACAGGAGGCAGAGAAGGAATCCAAGCGGCTTG
AGCTTCAAAAGTTGGAGCAGGAGCAACGTAGTCGCGAGGAGAAGGAGCAC
AAGGAGCGGGAGAAGTTGGTCATAAGCACCACCAAGCTCCAGCCGGCCCA
CGTACCCATCAAAACGTCACCGCAACCTTTGAGCCCTGAGAAAACTGCAC
CAGGATTTGCCAAACAATCTGACCGATGCGGAGCGCATGCGTCAAGCGAG
GAACCAGGAGGCCCCGCGAATTGATTGGCTCTCGTGTGGGTGCTGCAAGG
CCATGTTTACAAAGCACACGAGCGAGGGACAACTTCAGTCTAAACTAAAT
ACGCAACCGCCGGGCAAACCAGCTCGCAACTCGATTGCCCAGCGCATCAA
CGTTTCAACCAAACCAGCCTCAAGATGCACCTGTGCCTTCACCACCACGC
GCTGGCGTCCCTGCCAAACCGTTGCCTGTAAAGCTCCCGAACAGTAGTCC
CCGCCTCCAGCTAAAGCTCTGCTGCTCCGGTGCCTGCGAGGTTGCTCCCA
ATAGCGAAGGTGGAGAACCCACCGATAACGATTGCCACTGTCC
UFO10401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abp1-RA | 2500 | CG10083-RA | 424..1536 | 9..1115 | 5115 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13485087..13485543 | 717..261 | 2285 | 100 | Minus |
| 3L | 28110227 | 3L | 13485602..13485857 | 264..9 | 1280 | 100 | Minus |
| 3L | 28110227 | 3L | 13484851..13485027 | 893..716 | 730 | 97.8 | Minus |
| 3L | 28110227 | 3L | 13484591..13484788 | 1087..894 | 560 | 92.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:25:35 has no hits.
UFO10401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:52:34 Download gff for
UFO10401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10083-RA | 442..1545 | 9..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:37 Download gff for
UFO10401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abp1-RA | 424..1527 | 9..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:27 Download gff for
UFO10401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abp1-RA | 424..1527 | 9..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:27 Download gff for
UFO10401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13484569..13484788 | 894..1106 | 92 | <- | Minus |
| 3L | 13484851..13485027 | 716..893 | 97 | <- | Minus |
| 3L | 13485089..13485540 | 264..715 | 100 | <- | Minus |
| 3L | 13485603..13485857 | 9..263 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:37 Download gff for
UFO10401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13477669..13477888 | 894..1106 | 92 | <- | Minus |
| arm_3L | 13477951..13478127 | 716..893 | 97 | <- | Minus |
| arm_3L | 13478189..13478640 | 264..715 | 100 | <- | Minus |
| arm_3L | 13478703..13478957 | 9..263 | 100 | | Minus |
