UFO10402.5prime Sequence
1197 bp (1077 high quality bases) assembled on 2011-12-19
> UFO10402.5prime
CAGTCGACATGGAGATCCTGCTGGAACTAAACCTAAAGCAGAAGCTGGCC
ACCCGACTAGGCACCATCCTGCTGGCCACAGTGATCTTCGGCGCCTTTTG
CTGGGACAACGCGTTGGCCAGTCTAACACTGGGAGCAGTGGTGGCTCTCC
TGCTCAGAAATCCCACCTTCGTCTTTGCCTTGGTAATGACCGCGTCCAGG
GACCTAAAGGCTTTCCAGCGATTCGTGGCCCTCAACATCTACCTGCTAAG
AAAGGATCGCGGCGGATTCACTGTGGCCCGCTGTTTCCAGGACCAGGCCA
GACGCCGCCCCAAAAAGACATGCTTCGTGATGGACGATCGCCATTTAAGC
TTTGCAGAGGCTCTGGAGTTTAGCCAAAAGATAGCTGGATATTTTAGCGA
TCGCGGCCTGGAGAGGGGCGACTGTGTGGCCCTACTAATGGAAACGCGTC
TGGAGTATCCCTGCATTTGGTTGGGTCTCTCCCAGCTCGGGGTAATCACA
GCCCTTATTAACTCCAATCTGCGCGGGGAGTCTCTGCTGCACTCCATCAA
AGTGGCCAATGCCAAGGCCCTAATTGTGGGCAGTGAACTCCTGGATGTGC
TGGTATCACTTAGGGAGAAGGAGCAGTTGGACGAGGTGCCCATCTATCAG
TACACAGATGACGAGGTTCGCGGGGTGGCTGGACATGATCTTTTGCCAGG
AGCTGTGGACTTGGTTACTGCTCTAAAGACCCAAAAGAAACTGGAGCTAC
CGAGTGCTGTCTGTCCTGAGAAGCTCGTTCCAAATTGCTCTACGTTTACA
CCTCTGGAACTACGGGCTTGCCCAAAGCAGCTGTGATCACCAACCTGCGG
TTCCTCTTCATGTCTGCAGGATCCTACTACATGCTCAAGATGTCCAGCGA
CGATGTGGTGTACGATCCCCTTCCCCTCTACCACACCGCTGGGGAATTGT
GGGAGTGGGCAATGCCATCCTCAATGGATCCACGGTGGTGCTGCGCAAAA
GTTCTCGGCCAGGACTTCTGGCTTGACTGCGATCGCCCACAACTGCACTG
TGCCCCAGTATATCGGGAGCTGTGTCGCTTATCTTTCTGGCCACCTTCCT
ACTCCCCCGGATCAGCAGAGCCCACTTGCTCTGATTACGGATTGACTGAG
CCCAGATCGTCCAGTCGTCCGTCCCTCGGAATTCCCGCACATAGGAA
UFO10402.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3394-RB | 2357 | CG3394-RB | 252..1451 | 9..1196 | 5360 | 97.5 | Plus |
| CG3394-RA | 2308 | CG3394-RA | 203..1402 | 9..1196 | 5360 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24295908..24296782 | 209..1079 | 4065 | 99.2 | Plus |
| 2R | 25286936 | 2R | 24295650..24295850 | 9..209 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:25:47 has no hits.
UFO10402.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:52:35 Download gff for
UFO10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RB | 126..1255 | 1..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:45 Download gff for
UFO10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 196..1325 | 1..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:32 Download gff for
UFO10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3394-RA | 196..1325 | 1..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:32 Download gff for
UFO10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24295643..24295849 | 1..208 | 98 | -> | Plus |
| 2R | 24295908..24296830 | 209..1129 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:45 Download gff for
UFO10402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20183166..20183372 | 1..208 | 98 | -> | Plus |
| arm_2R | 20183431..20184353 | 209..1129 | 98 | | Plus |
