UFO10407.5prime Sequence
1165 bp (1043 high quality bases) assembled on 2011-12-19
> UFO10407.5prime
CAGTCGACATGAGAGTGCGACTGACTTTGCTAACGATATGCATTTACCTA
TGCGCGGCTGCAGCTGAGGATCTGGACTCCATCCATGAGATCCGCAGTGA
GGTGGAGGAGCTGATCAAAGGTACGGAGGAGCTAAACCATGGGCTGCAGA
AAGTGAAGGACGTGCAGAAGGGCATTGAAGAGAAGTTCAAGCATCAGCGC
GACGAGATCGAACTCATTGCTGGATTGGAGGTTGCCATAGCCAAGCTGGA
ATCGAACGTTCAAAGCAGCTTCCAAGCCACGGCCTCTGGAGTGGGAAATT
TGACAGCCATTGTTAACGCAATCCAGGGTCAGAATGAAAACTCTATTAGG
AATCTTACCAAAGTGGAGCTAGAAATCAGGAAAGCCCTGGAACAAGTGGC
TGCCAATCAGAACAAATACGAGCAGAACCTAAATGAAGTGGCCTCATCCG
TCAACTCGCATCTGTCGGAGATTCAGCAGCTGCTATCACAGGCCGTCATA
GGGGAACTCATCGGCTTGGACAATAAAGCGAAGGTCCTCCAGGAGCAGCA
GCGCAACATCGTGGGTCAAGTGGGATATCTGGGCGAACTTAAGGCTCTGG
CAGATCGTGCCAATCGCAAAGTCAATCAATTGGAGTGGGGTCTGGTCATT
CTCAACCGCACTCAGTCCGAGAGCCTCAACAGCATCGAGCACACTGTCCA
TGGAGTGCAGGTGGCCACCTCACAGGTCGATCATAAACTGGCTGCCCTAC
TGAACAATCAGAAGAACATTGAAAGGACGCTGGATGGCTGCAAGCACAAA
AATCCGTCACACCAGAAGCCCCACGAGATCTGGACTCACCCGGAACACGC
ACCAATTTACAAGCCAAAACCAGAGGGCAATCAAGGATACGAGACGTCTA
TGCATCCCAAGAGAGCTGATACCTATACAAACTTTGGTATGGAAAGGGCC
AGGCAGCTTTCTAGACATTCGTTTGGCGCGCGGGCCCAGGTAGTGTCATA
TCATATCATATCATATCATAATCACACTAGCCTAGGAGATCCTGTCATGA
CTAGGTGCCTGGATTCTCACCATTAAACGCCCGCCGCAACCGAAGCGTTC
TGACATCCGAATGGAGTTCTGAGTTCATACTGGAATCATCACGGAATCAA
GCGAGCTCGATATCA
UFO10407.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13083-RB | 1145 | CG13083-RB | 34..982 | 8..952 | 4645 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19487523..19488378 | 8..863 | 4280 | 100 | Plus |
| 2L | 23513712 | 2L | 19488435..19488528 | 863..952 | 275 | 93.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:26:03 has no hits.
UFO10407.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:52:37 Download gff for
UFO10407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13083-RB | 31..989 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:55 Download gff for
UFO10407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13083-RB | 31..989 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:38 Download gff for
UFO10407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13083-RB | 31..989 | 1..960 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:38 Download gff for
UFO10407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19487520..19488377 | 1..862 | 99 | -> | Plus |
| 2L | 19488435..19488528 | 863..952 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:55 Download gff for
UFO10407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19487520..19488377 | 1..862 | 99 | -> | Plus |
| arm_2L | 19488435..19488528 | 863..952 | 95 | == | Plus |
