UFO10408.5prime Sequence
1159 bp (1048 high quality bases) assembled on 2011-12-19
> UFO10408.5prime
CAGTCGACATGACGGCTGAGACAGGAACAGCGCCTATGCCCACCTGGCTG
AGAGCAAATCTATTCGAAGAATTGCTAAGTAAACGTTACGGCGGCAATTA
TGCCGGAATCAAAAGTTTCAAGCCGGAAGCCGGGCTCAAGCCGGGAGAAA
ACTACTCCACAATTATGCTGCGCCTCAAGCTTGAAGTCGAACTGCAGGAT
CACACAATCGAAAATGTGAGCTATATGCTGAAGACTCCCTATGATTTCGA
GATGTATCGCGAGATTCTGAGGAAGAACAACATGTTTGCTGTGGAGAGGG
ATGTGTTCATTCAGGTGATTCCCGAGCTGGAACAGATGTACAAGGATGTG
GGCGTGGAGGTCAAGTTTGGGGCCAAGGCTTATGAAATCGACGCGCCCGA
TGATTACGTACTTCTGCAGGATCTGGGTCCTTTGGGTTTCAGGAACGTCG
ATCGCCTGGAGGGCCTAGACATGGTTCACACCAAGTGTGTTCTAAAGAAG
ATGGCCCAGTGGCATGCGGTATCGGCCACCAGGATCCATCTCAAGGGTCC
GTACCCCCAGAACTACTTGCAACCCACGTACGCCGATACCATGAAGGAGA
GCATCGAACAGGTGGCTGAAACCTTGGGCAAGTATTTCCTCAAGTGCCTG
CCACTCTACGAGGGTTACGAGGAGTACAGTGCGGCGGTTCACAAGATGCA
ACCTAAAATCGTCGACCTTATGTATGCTATGAACACGCCCGATCCGCAGG
ACTTCAATGCTCTGAATCATGGAGATTGCTGGACCAGCAACATCATGTTT
AAGTACGAGGACGAGTCGCCCGAACCGATCGAGACATATTTCGTGGATCT
CCAACTGCCCAAGGTCACGAGCGTGCATATGATCTGATCTATTTCCTCCT
GGCTCGACGAAATTCGAAATCCAATTGAGTCAGTTCGATTACTTCATCAA
GTACTACACGATCACCTGTCGAGCCCTTGAGATGCTGAACTACCCCGAAG
CAAAACCCCCCACGTTGGGTTCCTCAAAACTCAGCTATTGAAATATGGAC
GAGTTGGGTATCACAATGCTTTATTCTCTGCCACCAATGCTGCTCGAATC
CGACTGAAGATGCAAATTGAACCGAATTTCCGCAACCGAACGGAGATAAA
TGGGCGCAA
UFO10408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10559-RB | 1435 | CG10559-RB | 13..1128 | 9..1117 | 5255 | 98.6 | Plus |
CG10560-RA | 1367 | CG10560-RA | 370..574 | 315..519 | 245 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25315368..25315859 | 689..198 | 2460 | 100 | Minus |
3R | 32079331 | 3R | 25314927..25315300 | 1057..690 | 1510 | 97.3 | Minus |
3R | 32079331 | 3R | 25315915..25316104 | 198..9 | 950 | 100 | Minus |
3R | 32079331 | 3R | 25319469..25319673 | 519..315 | 245 | 74.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:26:09 has no hits.
UFO10408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:52:37 Download gff for
UFO10408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10559-RB | 7..1140 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:58 Download gff for
UFO10408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10559-RB | 7..1140 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:41 Download gff for
UFO10408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10559-RB | 7..1140 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:41 Download gff for
UFO10408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25314928..25315300 | 690..1056 | 97 | <- | Minus |
3R | 25315368..25315858 | 199..689 | 100 | <- | Minus |
3R | 25315915..25316110 | 1..198 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:58 Download gff for
UFO10408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21140650..21141022 | 690..1056 | 97 | <- | Minus |
arm_3R | 21141090..21141580 | 199..689 | 100 | <- | Minus |
arm_3R | 21141637..21141832 | 1..198 | 97 | | Minus |