UFO10410.5prime Sequence
1121 bp (1031 high quality bases) assembled on 2011-12-19
> UFO10410.5prime
CAGTCGACATGCTGCGCCTACTGATCGTTTTGGGATTTTATATCCTGGGC
TGCCGAGCAGCCTGCAATACCTGCAACGCTAATGGCGTGTCCTGTATATC
GGAAACGGAGTTTCAGTTCTGCTCCTCCGCCAGCGAACCCATCGGAAACC
TCTACACCTGCCCCACCGGTTACTACTGCACAGAGAGCACGCCCATTTGC
AGCTCCGTGGCATCTTCGGCAGGTTGTACAGGATGCAATACGTGCAGTTC
GGATAATCGTTTTGCTTGCACCGGTCGGAATACCTTTGCGCTGTGCCTAG
GTACTTCTACACCCAGTACATCGATTGGCGGAAGCTGTGGCACTAATTAT
GTATGCAACGTGGGGAACGCCAATATCTGTGGCAGTCCTGCCACATACGC
AGTATCCTGTTCCACATCAAGTACGTCAGACTGCGATACTACGGCCATCA
AAAATGCCACCGAGTATTGTCAAACCATTCAAACAGCCGGAAAATATCCT
TATGGCGGAGATACCTCAACCACCTGCAGGCAATATGTGAACTGTTACAC
CGCTGCTGGTATTTTCTATGGAAATGTGTACACTTGTCCAGGACTCACCT
ACTTCGATAGTACCTCCAAACTTTGCACCACCCAAACGCAGGCCAGATGC
TCGGATACAGTGTCTTGTTTGACTCTCAATAACCGATTATTGCCGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATTCAAATTACCCCCCCGCCCTGCCACC
TCATCGCAGTACTGTTGTAATTCATAGCATTCTGCCGACCTGGAAGCCAT
CACAAACGCATGATGAACTGAAATCGCCAGCGCCACTAGCACCTGTTCGC
TGCAATTAATTATTTGCCCATGTGAAACGTGACCAAAAAGTGTCATATGC
ACGTTTATATCAACTGGTGGT
UFO10410.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13309-RA | 800 | CG13309-RA | 17..703 | 9..695 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8810411..8810934 | 9..532 | 2620 | 100 | Plus |
| 3L | 28110227 | 3L | 8811006..8811168 | 533..695 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:25:28 has no hits.
UFO10410.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:52:33 Download gff for
UFO10410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13309-RA | 8..710 | 1..703 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:33 Download gff for
UFO10410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13309-RA | 8..710 | 1..703 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:24 Download gff for
UFO10410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13309-RA | 8..710 | 1..703 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:24 Download gff for
UFO10410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8810402..8810934 | 1..532 | 99 | -> | Plus |
| 3L | 8811006..8811175 | 533..703 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:33 Download gff for
UFO10410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8803502..8804034 | 1..532 | 99 | -> | Plus |
| arm_3L | 8804106..8804275 | 533..703 | 97 | == | Plus |
