UFO10413.5prime Sequence
1060 bp (1034 high quality bases) assembled on 2011-12-19
> UFO10413.5prime
CAGTCGACATGGACCACTCATTTCCCAGCATGCCACCAAATATTTATCCG
GAGTGGAGTGACGCACGCACCTCAAGCATTAGCAATGGAAATCTCGTAGA
CCCAAAACTAGACCTGTTCTTCCTGATGAGGTCATATCAGTTTCCACTGC
CGCCTCTCTACTCCCGTAGAGAATTTCGTTGGAGCCTCGAGGGATCTCCG
CTGTCGGACGACGAGAAACGTGCTTATAACGATTCCATGATCGAGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGG
TTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCG
GAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCT
CATGGAAAACGGTGTAACAAGGGTGAACACTATTCCCATATCACCAGCCT
CACCGTCTTTCATTGCCATACGAAATTCGGATGAGCATTCATCAGCCGGG
CAGAATGTGAATAAAGGCCGGATAACTTGGTGCTTATTTTTCTTTACGGT
CTTAAAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGG
AGCACCTGAA
UFO10413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42841-RA | 577 | CG42841-RA | 106..342 | 9..245 | 1185 | 100 | Plus |
| CG42841-RB | 1087 | CG42841-RB | 106..342 | 9..245 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2005310..2005546 | 245..9 | 1185 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 814..881 | 123 | 68.1 | Plus |
UFO10413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:52:39 Download gff for
UFO10413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42841-RA | 102..345 | 1..249 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:13 Download gff for
UFO10413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42841-RB | 102..345 | 1..249 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:53 Download gff for
UFO10413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42841-RB | 102..345 | 1..249 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:53 Download gff for
UFO10413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2005310..2005550 | 1..245 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:13 Download gff for
UFO10413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2005310..2005550 | 1..245 | 98 | | Minus |
