UFO10414.5prime Sequence
1126 bp (1001 high quality bases) assembled on 2011-12-19
> UFO10414.5prime
CAGTCGACATGAAAGTATATATTTTGATCTGGACAATATTAGCTCTAACG
GCGGATATAAATGGCTTGGTTTGTAATCTTGAACCTTTTGTCCAAGGATC
ATGCCTGGAATTGACAGACCTCTATTCCTATGTTGAATATAAAAACGATT
GTGTATACTGGCAGGGATGCCTTCTGAATGGAAATCATTTTAGCAAAAAA
GAGGAGTGCGAAGACATGTGCAAGCAAGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTG
CCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAA
ATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATAT
TCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCC
ACATCTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGATATTCA
CTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACA
AGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATAC
GAAATTCCGGATGAGCATTCATCAGCGGGCAGATGTGAATAAAGCCGGAT
AACTTGTGCTTATTTTTCTTACGGTCTTTAAAGCGTATTATCCAGCTGAC
GGTCTGATTATAGTACATGAGCACTGACTGAAATGCCTCAAAATGTCTAC
GATGCATGGATATATCAACGGGGGAATCAGTGAATTTTTCTCATTAGCTC
CTAGTCTGAGATCCTACTCGATAGCT
UFO10414.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42465-RA | 401 | CG42465-RA | 51..269 | 9..227 | 1095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3700366..3700526 | 67..227 | 805 | 100 | Plus |
| 2L | 23513712 | 2L | 3700245..3700302 | 9..66 | 290 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 229..299 | 792..862 | 129 | 68.1 | Plus |
UFO10414.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:52:40 Download gff for
UFO10414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42465-RA | 1..222 | 9..231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:18 Download gff for
UFO10414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42465-RA | 43..280 | 1..240 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:57 Download gff for
UFO10414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42465-RA | 43..280 | 1..240 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:57 Download gff for
UFO10414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3700366..3700526 | 67..227 | 100 | == | Plus |
| 2L | 3700237..3700302 | 1..66 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:18 Download gff for
UFO10414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3700366..3700526 | 67..227 | 100 | == | Plus |
| arm_2L | 3700237..3700302 | 1..66 | 95 | -> | Plus |
