UFO10415.5prime Sequence
1135 bp (996 high quality bases) assembled on 2011-12-19
> UFO10415.5prime
CAGTCGACATGTTAAAACTTTTGCTGCCATTAGCTATTGTGTGCCTGTTT
ATGGCTCACATACAAGCCAATCCCGAAGAAGCTAACAGGCGTCATAAAAT
CTGCATTCGCACCTACGATAAGTGTATTGAAAATGAAGCTAGGTTGGGAA
AACAGGACGATACTTCAAAGTTCTTTAACGACTACTGTCGCCGTTCGGAT
TCTGGATGGTCAGATGTTAGCCGATGTGATCTTCTGCGAATAGCCTGTTT
ATCTACTGTGCGCGATTGCGAAACACCGACTTGCAAGAATGTTGCCCACC
GCATGCGTCTTTGGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCC
TTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAAT
ATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGAT
GAAACGTTTCAGTTTGCCTCATGGAAAACGTGTACCAAGGGTGAACACTA
TCCCATATCACAGCTCACGTCTTCATTGCCATACGAATTCCGGATGACAT
CATCAGGCGGGCAAGATGTGAATAAGGCCGGAAAACTTGGGCTTATTTTT
CTTACGTCTTAAGCGCCGAATATCCAGCTGAACGGTCTGATTAAGGTACT
GGACACTGACGGAATGCTCAATGTTCTTTACAAGC
UFO10415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eig71Ei-RB | 530 | CG7327-RB | 35..341 | 8..314 | 1535 | 100 | Plus |
| Eig71Ei-RA | 393 | CG7327-RA | 35..341 | 8..314 | 1535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15659819..15660039 | 32..252 | 1105 | 100 | Plus |
| 3L | 28110227 | 3L | 15660101..15660162 | 253..314 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:26:46 has no hits.
UFO10415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:52:40 Download gff for
UFO10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ei-RA | 27..350 | 1..323 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:23 Download gff for
UFO10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ei-RA | 27..350 | 1..323 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:00 Download gff for
UFO10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eig71Ei-RA | 27..350 | 1..323 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:00 Download gff for
UFO10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15659821..15660039 | 34..252 | 100 | -> | Plus |
| 3L | 15660101..15660162 | 253..314 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:23 Download gff for
UFO10415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15652921..15653139 | 34..252 | 100 | -> | Plus |
| arm_3L | 15653201..15653262 | 253..314 | 100 | == | Plus |
