UFO10416.5prime Sequence
1160 bp (1059 high quality bases) assembled on 2011-12-19
> UFO10416.5prime
CAGTCGACATGCGAGGATTTCTGTTACTCTTACTCATTGCTTCCGTTTCG
GCAGCAAAATTGGGCTACAATTACCAAGCTGCTGCTGGCGACCGTCGTTT
TGCGGGACTCATCGATGCGGAGGCCACAGGATTCAGCTCCACATCTACGC
AGCAGCAGCAGCAGCAACAAGCGCAACAGGAGCTTGTGCAGCAGAACACG
CAACAACAGATTCCAGCTGCTGCGGATGAGTTCAGCAAGGAGTTCTACAC
CTACGCTGCACCGGAGGAGGAGTTTGCGGATCAGGAGGCTACCGAGCACA
TCGCCAGCATGCTGAAACGCAATCTCCGCGTGCTGTTCATCAAGTCGCCG
GAACACCAAGGTCTCACCAACGCAGCCCTCCAGTTGGCCAAACAGGCCAG
CGAGCAGCGGACGGCCATCTATGTGCTCAGCAAGCAGGCGGATGTGAGTC
AGTTGGCGCAGCGCCTGGCCAATGAGAATCAGGCCCAAAGCCCCAAGCCG
GAGGTGCACTTCGTCAAGTACCGCACCCCGGAGGATGCGGTGCGTGCCCA
GCAGCTCATTCAGCAGCAGTTCGACTCCTTGGGCGGCAGCTCCCGCAGCT
CGGACGAGGGTGTCGCCCCCGTTTTGGACTTTAGCTCAGCACCAGCGGCC
ATAAGCGTCCAGGAGCAGAATGAGGCCCAAAATCAGGTTCAGGCAGTAAC
TCCTCTCACAAAGTATTTGCCAGCGGCATTGCTGCGCAACAAGGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGATCTATCAACA
GGAGTCCAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCACTCATCGC
AGTACTGTTGTAATTCATTAGGCATTCTGCCGAACATGAAGCAATCAAAA
CGGCAATGAATGAACCTGAATCGCCAGCGGCATCAGCCACTGTCGCCTGG
GTATAAATTTGCCCATGGGTGAAACGGGGGGCAAAGATGTTCATATGCCA
CGGTTATCAA
UFO10416.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlQ-RA | 893 | CG14250-RA | 68..802 | 9..743 | 3675 | 100 | Plus |
| Tb-RA | 1031 | CG5480-RA | 614..694 | 494..574 | 180 | 81.5 | Plus |
| TwdlN-RA | 1088 | CG5476-RA | 758..802 | 494..538 | 180 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26692637..26693357 | 743..23 | 3605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:26:53 has no hits.
UFO10416.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:52:41 Download gff for
UFO10416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 1..738 | 9..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:26 Download gff for
UFO10416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 59..808 | 1..752 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:04 Download gff for
UFO10416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlQ-RA | 59..808 | 1..752 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:04 Download gff for
UFO10416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26692631..26693363 | 17..752 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:26 Download gff for
UFO10416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22518353..22519085 | 17..752 | 99 | | Minus |
