UFO10418.5prime Sequence
1159 bp (1026 high quality bases) assembled on 2011-12-19
> UFO10418.5prime
CAGTCGACATGGATATTTCCAAGGCCGAGAGTCAAACGCCCGCCGGAGAT
CGTCGATCTGCGAGTCCTGATTATCTGAGAACTCTGCTGCAGGACATCCT
GTGTTTCCTGGTCCTGCTCTCGGTGGCCTTGCTAATTGTGGCTGGCATTT
TGTTTGTGGTGGAGGACGTAAGCCGGCTCCAGCAGCAGCACCAACACCAG
CCGTACCACCACCACCATCATCGCCACATGCGTCCGGATCAGATAGCCAA
TGAACTAAAAGGATCGCCGATCGAGGAGGCACCGAGGGAGCAAGGTCAAG
TCTTCCGACCGCACACATGGATTCGATTCTTTAACTGCAGGAACAAGGTG
CCACAGCAACAGCAGGAAAAAGTTGAAAGGGAGGCGGTTCAGTTTGGCCC
ACCAACGCAAGACGATCAGGCGCAGCAGATCCCATTAGATGCCGTTCAAA
CTTATCGCCCTGCCATAGAACCTATATCGCTGCGCTCTGGCGGAGATTAC
ATAGATGAAACGATCAACAAAAACCCGAATCCGGAACTTCGCCATTTTCT
GCCCAATAATATTATGATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTG
AAACGGGGGCGAGAGTTGTCATATTGGCCACGTTTAAATCAAACTGGTGA
ACTCACCAAGGATGGCTGAAACGAAACATATCTCATAACCCTTTAAGGGA
ATAGGCCAGTTCACCGTACACGCACATCTGCATAATGTGTAGAACTGCGA
TCGTCTGGATTCATCAGGCGAGAACGGTTCAGTTGCCTATGGAACGGTTA
CAGGGGTGT
UFO10418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1288-RB | 902 | CG1288-RB | 122..682 | 9..569 | 2805 | 100 | Plus |
| CG1288-RA | 1725 | CG1288-RA | 122..682 | 9..569 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7207760..7208310 | 559..9 | 2740 | 99.8 | Minus |
Blast to na_te.dros performed 2014-11-27 20:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2369 | 180..242 | 135 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6888 | 180..226 | 129 | 78.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2457..2503 | 180..226 | 127 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2398 | 174..226 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6817 | 180..242 | 117 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2434 | 174..259 | 115 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2395 | 180..228 | 112 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6795 | 180..241 | 112 | 64.5 | Plus |
UFO10418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:58:35 Download gff for
UFO10418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1288-RA | 106..669 | 9..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:34 Download gff for
UFO10418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1288-RA | 106..669 | 9..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:10 Download gff for
UFO10418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1288-RA | 122..685 | 9..573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:10 Download gff for
UFO10418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7207764..7208310 | 9..555 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:34 Download gff for
UFO10418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3033486..3034032 | 9..555 | 100 | | Minus |
