UFO10419.5prime Sequence
1136 bp (1028 high quality bases) assembled on 2011-12-19
> UFO10419.5prime
CAGTCGACATGCGGAAGGTCCAAGTTTTGGTTCAGACGCGCGACGGCAAG
AAGACCGTCTACGAGGTGGATCGCTTAGGAACGGTGGCCAGCCTGAAGGC
ACGGATCGGGCAGGTCATGTCCGTGCCCATGGGCTTCAGTCGGCTGTCGT
ACAAGGGTCGCGTGCTATCCAATCAGAGCGTACTGGAGGATTTGGGGCCC
AATAAGTCCACCCTGGATCTCACCTGGAAGCCGGTCGTCCTGACGGCCAA
TCAGAGCAGCAAGTTAAGCAAGTTCGGCTATGGCAGGATAGACGATAGTG
AAGTTATGTTTACACTGATCGGTGGCTATCAGCAACGCGAAGAATATCCT
GGTGGCCTAGTCAATCCACCGGACGACGAAAGTCAACTAAACTTCAACGC
AGGTGACGATGATGATGCACTGGAGGCCCAGGACATGACTGGACACGATT
TGTCCTCAATTCAAACCGATGATTTATCGCTCAAAGGCCAGACGGAACCG
GAGCTGGATTGCTCCATTGGATCTCATGGATTCTCTGGATCTCAAGAAGA
AGGCCACGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCC
GACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGC
GAGAGTTGTCATATGCCACGTTTAAATCAACTGGTGAACTCACCAGGGAT
GCTGAACGAAAACATATCTCATAACCTTTAGATAGCAGGTTCACGTACAC
GCCAAATCTGCCAATATATGTGTAGACTGCGGAATCGTCTGGAATCCATC
GACGAGACGTTCAGGTGCCTATGAACGGTACAGGTA
UFO10419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32713-RB | 796 | CG32713-RB | 73..624 | 9..560 | 2745 | 99.8 | Plus |
| CG32713-RA | 704 | CG32713-RA | 73..624 | 9..560 | 2745 | 99.8 | Plus |
| CG33223-RB | 689 | CG33223-RB | 67..618 | 9..560 | 2610 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8457009..8457560 | 560..9 | 2745 | 99.8 | Minus |
| X | 23542271 | X | 8465761..8466312 | 560..9 | 2610 | 98.2 | Minus |
| X | 23542271 | X | 13402476..13402714 | 250..9 | 785 | 89.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:27:18 has no hits.
UFO10419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:58:36 Download gff for
UFO10419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32713-RA | 66..627 | 1..564 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:38 Download gff for
UFO10419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32713-RA | 66..627 | 1..564 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:14 Download gff for
UFO10419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32713-RA | 66..627 | 1..564 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:14 Download gff for
UFO10419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8457009..8457564 | 1..560 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:38 Download gff for
UFO10419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8351042..8351597 | 1..560 | 99 | | Minus |
