UFO10423.5prime Sequence
1069 bp (975 high quality bases) assembled on 2011-12-19
> UFO10423.5prime
CAGTCGACATGTCGCACCGCCACCAGGACATTCCCATCCGCCCACGTTAC
GGTTATGTGGCCGAGGAGAGTGGCCCATCGGAAGGGGCAGCCAGGAGTTC
CGGATCCGGAGCCACGCCCGCCTCCTCCTACACGGAAATTCCGTTCCTGG
CTCAGTATCCGGGAGCGGTGCCAGAGCACGTGCTCCAGGATCTGACGCCC
ACAGCCACTGGCCATGCTGCGATTCCCGGAAGCACAAAGACAAGACCCAA
CGGCGAGAAATACCTTAACCTGGATTCGGGCGAGGATCCCGACGAGGAAG
ACGATCCCTTGGAGGAGGAGGACAACAGCAACTCGAATAGCAACTCCAAG
GGCAGTTCCGGCGACATCGAGAGGCACAGACTGAAGGCAGAGAGCACTGT
GCCCTACGAGCTGGACGGCGAAACCAGTGACTCCGACGGGATGCGCCACT
TTGTGGCCCACGATCTAGAGGCCAAGTTGCGCGAGCGCGTGGCGGCTTCG
GCCTACTCCTCGGAGCACACCACGCCCCTGAGCTCCATGGGTCCCATTGG
AGCCACTTCCGGCAACGGTCTGCTCACGCGGCGGTTCCTGCAGTCGCGCA
ACATTCCCGAAGTGGACGGCAGCGTCTTGAGCGACATCGAACTGGAGGCT
CAGTACTTGGCCAGCTCGGTGGACAATCTGATGGAGAACCTTGGCAACCT
GCTACACTCGATCTCTTCCATAACTGCCGACAACGTGGAGGTCCACCGCA
CGCGGTCAACAAGCTGACGGACACTTTGGACGCGAATATCAAGTGCCAGT
ATCAATTGCTGGCCAAGGCGGAGGAAATCACCAAGTCGATGAAACCCACA
GAGCAGCTGGGTCAGCGCATAAGGCAGATCAAGCGGCTGGTGACATGTTG
ACAGCACCATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAGGTGGTCATATCATAATCATAATCATATCATATCCACACTAGCCTAGA
GATCCTGTCATGACTAGTGCCTGATTCTCCACATAAAAAACGCCCGGCGG
CAACGGAGAGCGTTTCTTA
UFO10423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17180-RB | 1097 | CG17180-RB | 104..1009 | 9..911 | 4290 | 98.5 | Plus |
| CG17180-RA | 1123 | CG17180-RA | 130..1035 | 9..911 | 4290 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 541485..541959 | 397..870 | 2205 | 98.1 | Plus |
| 3L | 28110227 | 3L | 541041..541428 | 9..396 | 1895 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:26:26 has no hits.
UFO10423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:52:39 Download gff for
UFO10423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17180-RA | 121..1038 | 1..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:09 Download gff for
UFO10423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17180-RA | 121..1038 | 1..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:49 Download gff for
UFO10423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17180-RA | 121..1038 | 1..914 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:49 Download gff for
UFO10423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 541032..541428 | 1..396 | 98 | -> | Plus |
| 3L | 541485..541959 | 397..870 | 98 | -> | Plus |
| 3L | 542017..542062 | 871..914 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:09 Download gff for
UFO10423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 541032..541428 | 1..396 | 98 | -> | Plus |
| arm_3L | 541485..541959 | 397..870 | 98 | -> | Plus |
| arm_3L | 542017..542062 | 871..914 | 93 | | Plus |
