UFO10427.5prime Sequence
1132 bp (1018 high quality bases) assembled on 2011-12-19
> UFO10427.5prime
CAGTCGACATGAGTTTGACGGAGATGATGCGGGGCAAATCGATGCCAGCG
GAAAAGAAGAATGACATCAAACTGGCCCAGCATGAATTTGCAACCGTGAG
AATAGTGCAAATCGGATGTGTTTTAAATGTCCTGGCCGAGGCCATCGAAC
GGGTTAAGATCTCGCTAATCATGCCGAAACTGCTGGAACACCCCGCGCAC
ATGGCTAAGATTCTTAATGGAACCAAGTACGAAAAGGCAGTTCACCTGGT
GGAATCGTTTGTTCGTCGAAGGGAGTTCATTCTGCGGGAGAAACGTCCGC
CCCTGATGGATCACGGCATTATCCAGATCATCGATTTCTTCCAGCGGAAC
AGCAGGATCTACCTTCTGTTTCCCAGCTACTACAACCACATGAGCGACAA
CGAGAAGAAGCTGCTGAACGCCTTCGAGATGCTCTATGATCTGGCCAAGG
ACCGCTTGTACAGGACGTCCACCGACGCCATCGCCCAGGAGCGCCAGCTG
CATGCCATGTACAAGCAGAACGAGGTGGTCAAGGAGCAGGTGGAAGAGCT
GCGCAAGAAGATCCTGGATCAGAAGGCGGCCATCAGGAAGAGCTTGGCTG
ATAAGGAGGCCTACCTGCAAAACTACGAGGACCTCCTCATGAAGAAGAAG
AGGGAGAAGAACGAGCGAATCCAAAAGGAAATCGATCGGTGCACTCGTCT
GGTAAAGGCCAATAAAAAATTAAGTTTAGAGCGACAAGCTGATTTGGAAG
ACAGCTGCAAAAAACGCGAAACAACTATAACTTAACCACAAAAACTATTT
AAAACAGGAAAAGGTGTTTCGAGAGGAAAAAAACAAGCTGATTTACAACT
ACAAGCCAATATCAAGAAATACGATCACAGCATTGGCGAAAAGATGATCG
AAGAACATGGAGCTCGCCGAAGAACACAAAAAGGCTAGGAAGGCCCTCAA
CGAATACATGATTGGGTTCCTGAAGGTTGAGCGGGTCTACAGCCAGATCG
TCGTAAGCCGAGAGGAAGAGGAGGCCAGGCCACCGCCAGCATCGTGTCCT
GTTATTCCGCCCATGAACCGGCGCTAGCCATCAGAATCCAAAATACTGAG
AAGTGGAAGAAACCATGGCCCAGAAGAACTGC
UFO10427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1137-RA | 1363 | CG1137-RA | 127..1248 | 9..1129 | 5135 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6559307..6559905 | 682..84 | 2995 | 100 | Minus |
| 3R | 32079331 | 3R | 6558805..6559030 | 1057..831 | 885 | 95.6 | Minus |
| 3R | 32079331 | 3R | 6559098..6559247 | 830..683 | 650 | 98.7 | Minus |
| 3R | 32079331 | 3R | 6560150..6560225 | 84..9 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:27:25 has no hits.
UFO10427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-19 13:58:37 Download gff for
UFO10427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1137-RA | 120..1248 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:42 Download gff for
UFO10427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1137-RA | 120..1248 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:17 Download gff for
UFO10427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1137-RA | 120..1248 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:17 Download gff for
UFO10427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6558733..6559030 | 831..1129 | 92 | <- | Minus |
| 3R | 6559098..6559247 | 683..830 | 98 | <- | Minus |
| 3R | 6559307..6559904 | 85..682 | 100 | <- | Minus |
| 3R | 6560150..6560232 | 1..84 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:42 Download gff for
UFO10427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2384455..2384752 | 831..1129 | 92 | <- | Minus |
| arm_3R | 2384820..2384969 | 683..830 | 98 | <- | Minus |
| arm_3R | 2385029..2385626 | 85..682 | 100 | <- | Minus |
| arm_3R | 2385872..2385954 | 1..84 | 96 | | Minus |
