UFO10502.5prime Sequence
1112 bp (1069 high quality bases) assembled on 2012-01-06
> UFO10502.5prime
CAGTCGACATGCTTATTCTAGCCCTTGTTGTGTGGCTCGCTTACCCAAAT
CTTTGCTTGGCCCAGTACCACCTTAATCCTCCCAAGACCATCTTTCCGGA
CTTCAAGTTTCCCTCGGATTATAGGGATACACCCATAGTTTTTGAATGGA
AGAATCTGCAGTACGGCTTCCCCAGTGAACAGGAACGCGATCAGGTGCTC
CGGAATGGTCGCTATAATCCGGATAGTCCCATACCCATAGACATCGATGT
TTATTATCCACCTAATGGCGGTCCACCTAGACACTTTGTGACATCGCCTC
GCTTCGGACAGGGAGTTCCCTTTTCCCTGGGCTATGTGACCAATGTGCAG
CGGGAGAACGGAAGTGAAATCCAGGCCTATCCTAGCTACCAGTGGCACAG
TAGCCACGGAGCGAATTGCGATGGTCTAACGTCCGTGTACCGGGTTCATA
TCGATGCCTGTGGTCAGATGTGGGTGCTGGACAGCGGTGAAATTGAGTTC
GTGCAGCACTGTGCCCCACAGGTTATGGTCTTCGACTTGGCCACCGATCA
GTTGATCCATCGGTATCGTCTGCCCGAAACATCCTATAAGGCGAAGGTCA
GTAGATTTGTGAATATATTTGCAGACATCAGGGACCCACCGCCAAGTGGG
CAGTGCAAGGATGTATTTGCCTATCTGGCGGATCCCACAAGTAAGGCCAT
AGTGGTGTACGATGTCGTGGGTCAGAGCTCCTGGCGCATCGAGAACAAAT
TCACCTATCCGGATGCTAAGTTCGGAACGCACACAGTGGCTGGTGAGAGT
TTTGAGCTGCTCGATGGACCTTTGGCTTTGGCGACGACTCCTTTGGGACT
GGGATTGCGCCGCCATCTGATTTTCCACGCGCTGTCCAACGAACTGGAGC
TGGCCATTCCTTTGGATATCCTAAATAATGCCACGAATTGGCAAAAGGGT
CTGAGCTCCTCCCTGTCGGAATTCACTGTCTTGGGTAAGAAGAGGGATTC
AGTGTGCCCCGCATGCGATAGCAGACAGGATTCTGTTCTGTGGCTTCCTG
GAGCCATCGGATTTCGGCTGGACATACGGAGGCCCTACATCGCGAAATTG
TCCAGCTACTGC
UFO10502.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e2-RB | 1571 | CG17044-RB | 66..1174 | 9..1110 | 5275 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13405506..13406372 | 1110..251 | 3835 | 98.3 | Minus |
| 3R | 32079331 | 3R | 13406614..13406868 | 265..11 | 1260 | 99.6 | Minus |
Blast to na_te.dros performed 2014-11-27 20:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ivk | 5402 | Ivk IVK 5402bp | 2433..2501 | 858..789 | 140 | 68.6 | Minus |
UFO10502.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:53 Download gff for
UFO10502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e2-RB | 35..1146 | 9..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:20 Download gff for
UFO10502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e2-RB | 35..1146 | 9..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:46 Download gff for
UFO10502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e2-RB | 66..1177 | 9..1112 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:46 Download gff for
UFO10502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13405503..13406361 | 262..1112 | 98 | <- | Minus |
| 3R | 13406618..13406875 | 1..261 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:20 Download gff for
UFO10502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9231225..9232083 | 262..1112 | 98 | <- | Minus |
| arm_3R | 9232340..9232597 | 1..261 | 98 | | Minus |
