UFO10503.5prime Sequence
1133 bp (1031 high quality bases) assembled on 2012-01-06
> UFO10503.5prime
CAGTCGACATGGCGGGAATTCAGCTGCAATCGGGATGCACGATGGTCGTG
ACGGTGGTGCTCCTGCTGCAGGTGCTTGTGATGGACCAGGTGCTCGGCCA
GGGTCCACCGCAGACTCAAGTGTGTCCGGAGCAGAGCGAGATCGCGCCCT
GCATCTGCACGGTGAAGAAGAACGGGCTGGACATCCTGTGCGAGACCACC
GATCTGGCGCACATCACCAAGTCGATGGGCACGCTGAAGGGCAAGAGTCC
CATCATCTTCTACCTGAAGCTTCGCCACAACAATCTGCCCAAGCTGCAGG
GCTTCGTCTTCCTGGCCCTTGACATCCGTCACCTGACCATCCACAACAGC
AGCCTGGCGGCCATCGAGGAGAACGCCCTCAGCTCGCTGGGAGCGGGACT
GACGCAGCTGGATGTGTCCCTCAACCAAATGAAGACGGTGCCCTCGCAGG
CTCTGCAACATCTGTTCCACCTGTTGATCCTTAATCTGAACCACAATAAA
ATCACCGTGATCCACAACAATGCCTTCGAGGGACTGGAGACCCTGGAGAT
TCTGACGCTCTACGAGAACAAGATTACACAGATCGATCCCGAGGCTTTCC
GAGGACTTGAGGACCATATTAAGCGCCTGAATTTGGGTGGCAACGATCTT
ACCAATATCCCGCAGAAAGCTCTTTCCATTTTGAGCACCTTAAAGAAACT
GGAGATTCAGGAGAACAAGATACGAACTATCAGCGAAGGCGATTTCGAAG
GCTTGCAGAGCCTGCACTCATTGATTTTGGCCCACAACATGATCACCACC
GTGCCTGCCAATGTGTTTAGTCACCTCACCCTGCTAAACTCCTTGGAGCT
GGAGGGCAATAAGATCAGTGTGATTGACAAGGATGCCTTCAAGGGCCTAG
AGGAGAACCTGCAATATCTGCCCTGGGTGATAACCAGATCCACACTATTC
CCAGCGAGGCACTGCGTCGCTGCACGCCTTCGCCACTTGGACTTGCGCAC
CACAATATCAATGTTTTGGCTGAAGATGCCTTCCACTGCCTTGGAGATCC
CTGACTTTCCTCAACTGCGAAGAACGACTCAAGGTCTGCCAGGTCTTCTG
TTTGGAGAAACCTCAACTCGCCTGGAAACGCTG
UFO10503.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14762-RB | 3801 | CG14762-RB | 836..1967 | 8..1133 | 5255 | 98.3 | Plus |
| CG14762-RA | 3658 | CG14762-RA | 836..1967 | 8..1133 | 5255 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8012346..8012729 | 391..8 | 1920 | 100 | Minus |
| 2R | 25286936 | 2R | 8012060..8012283 | 613..390 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 8011643..8011797 | 903..749 | 760 | 99.4 | Minus |
| 2R | 25286936 | 2R | 8011865..8012002 | 751..614 | 690 | 100 | Minus |
| 2R | 25286936 | 2R | 8011415..8011582 | 1065..903 | 500 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:28:53 has no hits.
UFO10503.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:54 Download gff for
UFO10503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RB | 832..1966 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:23 Download gff for
UFO10503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 833..1967 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:49 Download gff for
UFO10503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14762-RA | 833..1967 | 1..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:49 Download gff for
UFO10503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8011401..8011581 | 904..1077 | 93 | <- | Minus |
| 2R | 8011643..8011795 | 751..903 | 99 | <- | Minus |
| 2R | 8011866..8012002 | 614..750 | 100 | <- | Minus |
| 2R | 8012060..8012282 | 391..613 | 100 | <- | Minus |
| 2R | 8012347..8012732 | 1..390 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:23 Download gff for
UFO10503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3899371..3899507 | 614..750 | 100 | <- | Minus |
| arm_2R | 3898906..3899086 | 904..1077 | 93 | <- | Minus |
| arm_2R | 3899148..3899300 | 751..903 | 99 | <- | Minus |
| arm_2R | 3899565..3899787 | 391..613 | 100 | <- | Minus |
| arm_2R | 3899852..3900237 | 1..390 | 98 | | Minus |
