UFO10504.5prime Sequence
1060 bp (1004 high quality bases) assembled on 2012-01-06
> UFO10504.5prime
CAGTCGACATGCGGTTGATTTTTTTCTGCTTGTGCCTCTTTTTGTCCCTG
GAGCTAGTAGTGCCCAGACATGTCGTGGGCCACGATGGATACCACAACAT
CGAGAAGGAAAAGCGCTGGAAAAACTGGCCAGCACGTGTGAGGCACCACC
ATAAACAACGTAACTCCATCGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAAT
AAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTT
GCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAG
AGCGATGAAAACGTTTCTGTTTGCTCATGGAAAACGGTGTAACAGGGTGA
ACACTATCCCATATCACCAGCTCACGTCTTTCATTGCCATACGAATTCCG
GATGAGCATTCATCAGCGGGCAAGAATGTGAATAAAGGCCGGATAAAACC
TTGTGCTATTTTTCTTTACGTCTTTAAAGGCCGAATATCAGCTGACGGTC
TGTATAAGTACATTGAGCACTGACTGAATGCCTCAATGTCTTACGATGCC
ATTGGGAAATTAACGGGTGTAATTCCGTGATTTTTTCTCTTTTTACCTCC
CTAACTCGGA
UFO10504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42866-RA | 403 | CG42866-RA | 24..185 | 9..170 | 810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19961442..19961580 | 170..32 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:29:01 has no hits.
UFO10504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:55 Download gff for
UFO10504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42866-RA | 1..162 | 9..170 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:26 Download gff for
UFO10504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42866-RA | 24..185 | 9..170 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:52 Download gff for
UFO10504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42866-RA | 24..185 | 9..170 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:52 Download gff for
UFO10504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19961442..19961579 | 33..170 | 100 | <- | Minus |
| 2L | 19961639..19961662 | 9..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:26 Download gff for
UFO10504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19961442..19961579 | 33..170 | 100 | <- | Minus |
| arm_2L | 19961639..19961662 | 9..32 | 100 | | Minus |
