UFO10505.5prime Sequence
1134 bp (1030 high quality bases) assembled on 2012-01-06
> UFO10505.5prime
CAGTCGACATGATCAAGTTTTTTGCCGTGGTTGTCTTGCTGGCCATAAGT
CCGCTATCGTCTGATTCTACTCTAATTGACATTGTGTCTAGTTGTATAAA
TTTTCAGTTTAAGGCATTACTATACCTTGCGGAATCAACTGATGATAAAT
TTCATTGTATTGAAACATGTGTATATGATATTATCAGAAATCTTACAAAG
ATTGATCTACCTAAACGCCCGGATCCCGAAATATGTCAAGGCTTAAATGA
CAAATGTAAGTACGCCGAAGGATTACGAAAGTGTCTTCCACCAAATTTAG
ATGAAAGATTTTGGAAAGATGTTTTTACACGAATAGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCC
ACGTTTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAA
AAACATATTCTCATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTA
ACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGT
GGTATTCACTCAGAGCGATGAAAACGTTCAGTCTGCTCATGAAAACCGTG
TACAAGGGTGACACTATCCCTAATCACCAGCTCACCGTCTTTCATTGCCA
TACGAAATCGATGACATTCATCAGGCGGGCAAGAATGTGATTAAGCCCGG
ATAACTTGTGGCTTATTTTTCTTTAACCGTCTTTAAAAAGGCGGTAATAT
CCAGCTTGAACGGGCTTGTCTAAAGTACATGGCA
UFO10505.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43101-RA | 405 | CG43101-RA | 24..350 | 9..335 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15013102..15013362 | 335..75 | 1305 | 100 | Minus |
| 2R | 25286936 | 2R | 15013434..15013499 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:29:10 has no hits.
UFO10505.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:56 Download gff for
UFO10505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43101-RA | 1..330 | 9..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:29 Download gff for
UFO10505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43101-RA | 16..362 | 1..350 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:55 Download gff for
UFO10505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43101-RA | 16..362 | 1..350 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:55 Download gff for
UFO10505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15013102..15013362 | 75..335 | 100 | <- | Minus |
| 2R | 15013434..15013506 | 1..74 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:29 Download gff for
UFO10505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10900607..10900867 | 75..335 | 100 | <- | Minus |
| arm_2R | 10900939..10901011 | 1..74 | 94 | | Minus |
