UFO10506.5prime Sequence
1103 bp (985 high quality bases) assembled on 2012-01-06
> UFO10506.5prime
CAGTCGACATGCTTTTGGGCATGGCCATCGCTTTTCCCACTCATCAGTTC
GTGCCACACATACCTTATGGCATGGATGACTTTTACCCGTTTCTTGCCAG
AAATTCCACCGATGTGCTGCCGTTGTCTACAAATCTAACTCAAATTGAAC
GACTAGGATGGGCCGATAAATGTGTGCAGTTTAGAAATAAGTGCACATTA
GCAGAGCATTGTTGCAGTCTTAGATGCCTGAAACGTATTTATCGATGCAT
TACCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCTAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAA
GAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCC
AGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAA
TAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAG
AAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAACGTTTCA
GTTTGCTCATGGAAACCGTGTACAAGGGTGAACACTATCCCATATCACAG
CTCACCGTCTTTCATTGCCATACAAATTCCGGATGACATTATCAGCGGCA
GATGTGATTAAGGCCGATAACTTGTCTTATTTTCTTACGTTTTTAAAAGG
CGTATATCAGCTGACCGGTCTGGTTATAGTACATTGAGCACTGACTGAAT
GCCTCAAATGTTCTTACGATGCCATTGGAAATATCCAACGTGGTATACCC
AGG
UFO10506.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42870-RB | 368 | CG42870-RB | 45..290 | 9..254 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21737186..21737320 | 143..9 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 21737011..21737121 | 254..144 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:29:19 has no hits.
UFO10506.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:56 Download gff for
UFO10506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42870-RA | 4..267 | 1..266 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:32 Download gff for
UFO10506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42870-RB | 38..301 | 1..266 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:59 Download gff for
UFO10506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42870-RB | 38..301 | 1..266 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:59 Download gff for
UFO10506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21737011..21737121 | 144..254 | 100 | <- | Minus |
| 3R | 21737186..21737326 | 1..143 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:32 Download gff for
UFO10506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17562908..17563048 | 1..143 | 97 | | Minus |
| arm_3R | 17562733..17562843 | 144..254 | 100 | <- | Minus |
