UFO10508.5prime Sequence
979 bp (977 high quality bases) assembled on 2012-01-06
> UFO10508.5prime
CAGTCGACATGGAAATGCACTTCTCAGTATTTGTTGCGGTCACATTTCTT
TTGCTGTCGGACATCACTCATCCGCTGGAGACCCTCGATGACTTTGAAGT
CGCCGAGGAAATAACTACACCGCGCGAAAATGGGGATATTGTTGGTCCTC
TTAATCCGAAACGCATCGAGGGACGAACTCGACAAATGAGCGTACTATCT
TTTGTGGGAAAAAACCGAACGGGCAAAATGAATGAAAACTATTGCTGCTT
CTGGATATATCAGGCCCATCCTCCCATTCCTCACAGCTGGAAACATATGG
CCGAGTATCCATTCGATTTTCAGTTCAACGGAGAGTTTGTGCGGAACCAA
CGACACAATGAAGTTGAAGTGCCTGCAGTTCAGGATGGCGACAGTGACAA
CTCAACAAGTGTAATTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
ACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATAAACCCT
TTAGGGAATAGGCCAGGTTTTCACCGTAACACGCCCCATCTTGCGAATAT
ATGTGTAGAACTGCCGGAATCTCCTGGTT
UFO10508.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43063-RA | 488 | CG43063-RA | 29..436 | 9..416 | 2040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13086326..13086709 | 33..416 | 1920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:29:34 has no hits.
UFO10508.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-06 09:40:58 Download gff for
UFO10508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43063-RA | 29..436 | 9..416 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:40 Download gff for
UFO10508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43063-RA | 29..436 | 9..416 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:05 Download gff for
UFO10508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43063-RA | 29..436 | 9..416 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:05 Download gff for
UFO10508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13086252..13086276 | 9..33 | 100 | -> | Plus |
| 3R | 13086327..13086709 | 34..416 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:40 Download gff for
UFO10508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8911974..8911998 | 9..33 | 100 | -> | Plus |
| arm_3R | 8912049..8912431 | 34..416 | 100 | == | Plus |
